UHGV-0116960

Genome information

Genome length 38,771 bps

CDS count 56

Completeness 92.11% (high-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0116960
vOTU ID	vOTU-076967
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285947
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.11% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.91
Jumbo phage	No

Genome content
Genome length	38,771 bps
GC content	39.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.59%
Average CDS length	649.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0116960_1	KOfam	K14059	int; integrase	NA
UHGV-0116960_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0116960_1	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-0116960_1	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0116960_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0116960_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0116960_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0116960_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0116960_2	PHROG	phrog_19856	NA	unknown function
UHGV-0116960_2	UniRef90	UniRef90_A0A4S2ABL5	Ftsk_gamma domain-containing protein	NA
UHGV-0116960_2	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0116960_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0116960_2	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0116960_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0116960_2	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0116960_3	PHROG	phrog_87	metallo-protease	other
UHGV-0116960_3	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0116960_3	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0116960_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0116960_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0116960_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0116960_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0116960_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0116960_4	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-0116960_4	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0116960_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0116960_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0116960_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0116960_5	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0116960_5	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0116960_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0116960_6	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0116960_7	PHROG	phrog_6058	NA	unknown function
UHGV-0116960_7	UniRef90	UniRef90_A0A0V8QBN7	Histone-lysine N-methyltransferase	NA
UHGV-0116960_7	eggNOG-mapper	1232447.BAHW02000016_gene1142	NA	NA
UHGV-0116960_7	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0116960_8	Structural annotation	PF11127	NA	NA
UHGV-0116960_10	PHROG	phrog_1499	NA	unknown function
UHGV-0116960_10	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0116960_10	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0116960_10	PADLOC	AAA_15	NA	NA
UHGV-0116960_10	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0116960_10	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0116960_11	PHROG	phrog_3657	NA	unknown function
UHGV-0116960_11	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-0116960_12	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0116960_12	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-0116960_12	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0116960_12	Pfam	PF12684	NA	DUF3799
UHGV-0116960_12	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0116960_12	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0116960_13	PHROG	phrog_7566	NA	unknown function
UHGV-0116960_13	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0116960_13	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0116960_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0116960_14	UniRef90	UniRef90_UPI0018A6ABED	Rha family transcriptional regulator	NA
UHGV-0116960_14	eggNOG-mapper	536232.CLM_1619	ORF6C domain	NA
UHGV-0116960_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0116960_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0116960_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0116960_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0116960_14	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0116960_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0116960_15	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0116960_15	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0116960_15	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0116960_15	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0116960_16	PHROG	phrog_15768	NA	unknown function
UHGV-0116960_16	UniRef90	UniRef90_A0A1P8Q2G7	DnaB_2 domain-containing protein	NA
UHGV-0116960_16	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0116960_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0116960_16	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0116960_20	PHROG	phrog_8684	NA	unknown function
UHGV-0116960_20	UniRef90	UniRef90_UPI000E4794A6	YopX family protein	NA
UHGV-0116960_20	eggNOG-mapper	742740.HMPREF9474_03496	YopX protein	NA
UHGV-0116960_20	Pfam	PF09643	YopX protein	YopX
UHGV-0116960_20	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0116960_21	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0116960_21	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0116960_22	PHROG	phrog_20593	NA	unknown function
UHGV-0116960_23	PHROG	phrog_874	NA	unknown function
UHGV-0116960_23	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0116960_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0116960_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0116960_24	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0116960_24	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0116960_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0116960_24	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0116960_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0116960_25	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0116960_25	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0116960_25	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0116960_25	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0116960_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0116960_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0116960_25	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0116960_26	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0116960_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0116960_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0116960_32	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0116960_32	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0116960_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0116960_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0116960_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0116960_32	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0116960_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0116960_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0116960_33	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0116960_33	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0116960_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0116960_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0116960_33	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0116960_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0116960_34	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0116960_34	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0116960_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0116960_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0116960_35	UniRef90	UniRef90_UPI00156DAD02	phage minor capsid protein	NA
UHGV-0116960_35	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-0116960_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0116960_35	COG	COG2369	NA	NA
UHGV-0116960_35	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0116960_36	eggNOG-mapper	1280.SAXN108_1325	NA	NA
UHGV-0116960_36	Structural annotation	PF11344	NA	NA
UHGV-0116960_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0116960_37	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0116960_37	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0116960_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0116960_37	Structural annotation	PF06810	NA	NA
UHGV-0116960_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0116960_38	UniRef90	UniRef90_A0A6L5YM37	Phage capsid protein	NA
UHGV-0116960_38	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0116960_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0116960_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0116960_40	PHROG	phrog_3366	NA	unknown function
UHGV-0116960_40	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0116960_40	Pfam	PF20536	NA	DUF6751
UHGV-0116960_40	Structural annotation	PF20536	NA	NA
UHGV-0116960_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0116960_41	UniRef90	UniRef90_A0A174B7G8	Minor capsid protein	NA
UHGV-0116960_41	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0116960_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0116960_41	Structural annotation	PF11114	NA	NA
UHGV-0116960_42	PHROG	phrog_3266	tail completion	connector
UHGV-0116960_42	Structural annotation	PF12691	NA	NA
UHGV-0116960_43	PHROG	phrog_3099	NA	unknown function
UHGV-0116960_43	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0116960_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0116960_44	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0116960_44	eggNOG-mapper	397290.C810_05234	NA	NA
UHGV-0116960_44	Pfam	PF20378	NA	DUF6673
UHGV-0116960_44	Structural annotation	PF10666	NA	NA
UHGV-0116960_45	PHROG	phrog_706	NA	unknown function
UHGV-0116960_45	UniRef90	UniRef90_R5H1B0	Bacteriophage Gp15 protein	NA
UHGV-0116960_45	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0116960_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0116960_45	Structural annotation	PF06854	NA	NA
UHGV-0116960_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0116960_46	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0116960_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0116960_46	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0116960_47	PHROG	phrog_1194	NA	unknown function
UHGV-0116960_47	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0116960_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0116960_48	PHROG	phrog_13879	NA	unknown function
UHGV-0116960_48	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0116960_48	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0116960_50	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0116960_50	PHROG	phrog_11157	NA	unknown function
UHGV-0116960_50	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0116960_50	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0116960_50	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0116960_50	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0116960_50	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0116960_51	PHROG	phrog_18725	NA	unknown function
UHGV-0116960_51	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0116960_51	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0116960_52	eggNOG-mapper	411463.EUBVEN_00426	NA	NA
UHGV-0116960_54	PHROG	phrog_1863	NA	unknown function
UHGV-0116960_54	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0116960_55	PHROG	phrog_443	holin	lysis
UHGV-0116960_55	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0116960_55	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0116960_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0116960_55	Structural annotation	PF16945	NA	NA
UHGV-0116960_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0116960_56	PHROG	phrog_435	endolysin	lysis
UHGV-0116960_56	UniRef90	UniRef90_UPI000E552B56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116960_56	eggNOG-mapper	1283341.Q24LG3_BPPCD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0116960_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0116960_56	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA