UHGV-0117023

Genome information

Genome length 40,654 bps

CDS count 60

Completeness 96.99% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117023
vOTU ID	vOTU-072535
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295531
BioSample	SAMEA4431896
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.99% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.97
Jumbo phage	No

Genome content
Genome length	40,654 bps
GC content	40.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.97%
Average CDS length	613.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117023_1	eggNOG-mapper	411470.RUMGNA_03962	NA	NA
UHGV-0117023_1	COG	COG4485	NA	NA
UHGV-0117023_2	KOfam	K12999	rgpI; glucosyltransferase [EC:2.4.1.-]	NA
UHGV-0117023_2	PHROG	phrog_841	GtrB-like O-antigen conversion	moron, auxiliary metabolic gene and host takeover
UHGV-0117023_2	UniRef90	UniRef90_A0A2N5NW02	Glycosyltransferase	NA
UHGV-0117023_2	eggNOG-mapper	411468.CLOSCI_04014	PFAM glycosyl transferase family 2	NA
UHGV-0117023_2	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0117023_2	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0117023_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0117023_3	PHROG	phrog_833	endolysin	lysis
UHGV-0117023_3	UniRef90	UniRef90_A0A829NR25	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0117023_3	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0117023_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0117023_3	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0117023_3	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0117023_5	PHROG	phrog_1129	holin	lysis
UHGV-0117023_5	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0117023_5	eggNOG-mapper	476272.RUMHYD_03138	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0117023_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0117023_5	Structural annotation	PF16079	NA	NA
UHGV-0117023_6	PHROG	phrog_1863	NA	unknown function
UHGV-0117023_6	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0117023_7	Structural annotation	PF08931	NA	NA
UHGV-0117023_8	PHROG	phrog_24103	NA	unknown function
UHGV-0117023_8	eggNOG-mapper	420247.Msm_1688	NA	NA
UHGV-0117023_10	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0117023_10	Structural annotation	PF09136	NA	NA
UHGV-0117023_11	PHROG	phrog_16164	NA	unknown function
UHGV-0117023_11	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0117023_11	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0117023_12	PHROG	phrog_21765	NA	unknown function
UHGV-0117023_12	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0117023_12	eggNOG-mapper	476272.RUMHYD_03672	PFAM Collagen triple helix	NA
UHGV-0117023_12	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0117023_13	PHROG	phrog_13289	tail protein	tail
UHGV-0117023_13	UniRef90	UniRef90_A0A1Y4GWP8	Prophage_tail domain-containing protein	NA
UHGV-0117023_13	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-0117023_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0117023_13	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0117023_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0117023_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0117023_13	Structural annotation	PF14594, TIGR01665, COG4926, COG3942	NA	NA
UHGV-0117023_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0117023_14	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0117023_14	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0117023_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0117023_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0117023_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0117023_15	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0117023_15	PHROG	phrog_5218	NA	unknown function
UHGV-0117023_15	UniRef90	UniRef90_A0A829NMZ9	PhageMin_Tail domain-containing protein	NA
UHGV-0117023_15	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0117023_15	Pfam	PF20628	Dyp-type peroxidase, C-terminal	Dyp_perox_C
UHGV-0117023_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117023_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0117023_15	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0117023_16	Structural annotation	PF11282, TIGR03930	NA	NA
UHGV-0117023_18	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0117023_18	UniRef90	UniRef90_UPI001F33991D	Rha family transcriptional regulator	NA
UHGV-0117023_18	eggNOG-mapper	1567013.A0A0A7RVU3_9CAUD	NA	NA
UHGV-0117023_18	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0117023_19	UniRef90	UniRef90_A0A845RC52	CopG family transcriptional regulator	NA
UHGV-0117023_19	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0117023_20	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0117023_20	UniRef90	UniRef90_UPI00156EB9E7	Rha family transcriptional regulator	NA
UHGV-0117023_20	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0117023_20	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0117023_20	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0117023_20	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0117023_20	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0117023_22	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0117023_22	Structural annotation	PF11836	NA	NA
UHGV-0117023_23	PHROG	phrog_88	major tail protein	tail
UHGV-0117023_23	UniRef90	UniRef90_UPI001E4C44E4	major tail protein	NA
UHGV-0117023_23	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-0117023_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0117023_23	COG	COG5492	NA	NA
UHGV-0117023_23	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0117023_24	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0117023_24	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0117023_24	Structural annotation	PF05657	NA	NA
UHGV-0117023_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117023_25	UniRef90	UniRef90_A0A829NR05	HK97 gp10 family phage protein	NA
UHGV-0117023_25	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0117023_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0117023_25	Structural annotation	TIGR01725	NA	NA
UHGV-0117023_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0117023_26	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0117023_26	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0117023_27	PHROG	phrog_5223	neck protein	connector
UHGV-0117023_27	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0117023_27	Structural annotation	TIGR01560	NA	NA
UHGV-0117023_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0117023_29	UniRef90	UniRef90_A0A829NVJ5	HK97 family phage major capsid protein	NA
UHGV-0117023_29	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0117023_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0117023_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0117023_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117023_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0117023_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0117023_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0117023_30	UniRef90	UniRef90_F7JW12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0117023_30	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0117023_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0117023_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0117023_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0117023_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0117023_31	UniRef90	UniRef90_F7JWF4	HK97 family phage portal protein	NA
UHGV-0117023_31	eggNOG-mapper	97139.C824_05972	Phage portal protein, HK97 family	NA
UHGV-0117023_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0117023_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0117023_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0117023_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0117023_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117023_32	UniRef90	UniRef90_F7JW13	Phage terminase	NA
UHGV-0117023_32	eggNOG-mapper	97139.C824_05973	Terminase	NA
UHGV-0117023_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0117023_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0117023_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117023_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0117023_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0117023_33	UniRef90	UniRef90_A0A3D4X7R2	Phage terminase small subunit P27 family	NA
UHGV-0117023_33	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0117023_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0117023_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0117023_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0117023_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0117023_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117023_34	UniRef90	UniRef90_A0A829NTQ4	HNH domain-containing protein	NA
UHGV-0117023_34	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0117023_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0117023_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0117023_34	Structural annotation	PF05766	NA	NA
UHGV-0117023_35	eggNOG-mapper	272559.BF9343_3767	NA	NA
UHGV-0117023_35	Structural annotation	PF11026	NA	NA
UHGV-0117023_36	UniRef90	UniRef90_A0A841KYH0	Ribosome-associated translation inhibitor RaiA	NA
UHGV-0117023_36	eggNOG-mapper	41431.PCC8801_3064	NA	NA
UHGV-0117023_36	Structural annotation	PF20505, NF001461	NA	NA
UHGV-0117023_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117023_37	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0117023_37	Structural annotation	PF02996	NA	NA
UHGV-0117023_41	PHROG	phrog_26861	NA	unknown function
UHGV-0117023_41	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0117023_41	eggNOG-mapper	397288.C806_01037	Single-strand binding protein family	NA
UHGV-0117023_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117023_41	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0117023_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117023_41	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0117023_42	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0117023_43	PHROG	phrog_7566	NA	unknown function
UHGV-0117023_43	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0117023_44	PHROG	phrog_15077	NA	unknown function
UHGV-0117023_44	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0117023_44	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0117023_44	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0117023_45	PHROG	phrog_8470	NA	unknown function
UHGV-0117023_45	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0117023_45	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0117023_45	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0117023_45	Structural annotation	PF14284	NA	NA
UHGV-0117023_46	UniRef90	UniRef90_UPI001C0EE701	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0117023_46	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0117023_46	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0117023_47	KOfam	K14159	rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]	NA
UHGV-0117023_47	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0117023_47	UniRef90	UniRef90_A0A414UW29	RNase H type-1 domain-containing protein	NA
UHGV-0117023_47	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0117023_47	Pfam	PF00075	RNase H	RNase_H
UHGV-0117023_47	COG	COG0328	Ribonuclease HI	NA
UHGV-0117023_47	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0117023_48	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0117023_48	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0117023_48	Structural annotation	PF01446	NA	NA
UHGV-0117023_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0117023_52	Structural annotation	PF10743, NF040990, COG3311	NA	NA
UHGV-0117023_54	UniRef90	UniRef90_A0A7T3MNF8	Lactate permease	NA
UHGV-0117023_54	eggNOG-mapper	1118063.I7J6R8_9CAUD	NA	NA
UHGV-0117023_54	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-0117023_55	UniRef90	UniRef90_A0A2N5NUM8	DNA-binding protein	NA
UHGV-0117023_55	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117023_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117023_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117023_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0117023_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0117023_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0117023_56	UniRef90	UniRef90_A0A1C5X479	LexA repressor	NA
UHGV-0117023_56	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0117023_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117023_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0117023_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0117023_56	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0117023_58	PHROG	phrog_10226	NA	unknown function
UHGV-0117023_58	eggNOG-mapper	1291050.JAGE01000002_gene3330	Restriction endonuclease	NA
UHGV-0117023_58	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0117023_58	Structural annotation	COG4127	NA	NA
UHGV-0117023_60	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0117023_60	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA