UHGV-0117228

Genome information

Genome length 33,894 bps

CDS count 50

Completeness 96.97% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117228
vOTU ID	vOTU-012110
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293812
BioSample	SAMEA4431973
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.91
Jumbo phage	No

Genome content
Genome length	33,894 bps
GC content	59.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.57%
Average CDS length	619.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117228_1	KOfam	K14059	int; integrase	NA
UHGV-0117228_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0117228_1	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-0117228_1	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0117228_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117228_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117228_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0117228_2	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0117228_2	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0117228_2	UniRef90	UniRef90_A0A1Q6T334	Toxin HicA	NA
UHGV-0117228_2	eggNOG-mapper	478749.BRYFOR_07601	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0117228_2	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0117228_2	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0117228_2	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0117228_3	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0117228_3	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0117228_3	UniRef90	UniRef90_A0A1Q6T3W5	HicB family protein	NA
UHGV-0117228_3	eggNOG-mapper	718252.FP2_04880	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0117228_3	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0117228_3	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0117228_3	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0117228_4	PHROG	phrog_22683	NA	unknown function
UHGV-0117228_4	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0117228_4	eggNOG-mapper	482234.SCAZ3_03515	NA	NA
UHGV-0117228_4	AcrCatalog	cluster_3962	NA	NA
UHGV-0117228_4	Pfam	PF13783	NA	DUF4177
UHGV-0117228_4	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0117228_5	PHROG	phrog_38135	NA	unknown function
UHGV-0117228_5	UniRef90	UniRef90_A0A1Q6T359	NA	NA
UHGV-0117228_5	eggNOG-mapper	742723.HMPREF9477_00941	dextransucrase activity	NA
UHGV-0117228_5	Pfam	PF14020	NA	DUF4236
UHGV-0117228_5	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0117228_5	Structural annotation	PF14020	NA	NA
UHGV-0117228_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0117228_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0117228_6	UniRef90	UniRef90_A0A6N8H052	Helix-turn-helix domain-containing protein	NA
UHGV-0117228_6	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0117228_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117228_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0117228_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0117228_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0117228_7	UniRef90	UniRef90_A0A2J4JRR6	Toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0117228_7	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0117228_7	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0117228_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117228_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0117228_8	UniRef90	UniRef90_A0A1M6TSX9	Helix-turn-helix	NA
UHGV-0117228_8	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0117228_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117228_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117228_8	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0117228_11	PHROG	phrog_10280	NA	unknown function
UHGV-0117228_11	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-0117228_12	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0117228_12	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0117228_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0117228_13	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0117228_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0117228_14	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0117228_14	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0117228_15	PHROG	phrog_7566	NA	unknown function
UHGV-0117228_15	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0117228_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0117228_16	UniRef90	UniRef90_A0A429ZWU1	Replication terminator protein	NA
UHGV-0117228_16	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0117228_17	PHROG	phrog_1029	NA	unknown function
UHGV-0117228_17	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0117228_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0117228_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117228_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117228_18	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0117228_18	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0117228_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117228_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117228_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117228_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0117228_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0117228_19	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0117228_19	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0117228_19	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0117228_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0117228_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0117228_19	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0117228_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0117228_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0117228_20	UniRef90	UniRef90_A0A1Q6T363	DNA helicase	NA
UHGV-0117228_20	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0117228_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0117228_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0117228_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0117228_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0117228_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0117228_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0117228_21	UniRef90	UniRef90_A0A1Q6T3I8	AAA_31 domain-containing protein	NA
UHGV-0117228_21	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0117228_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-0117228_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0117228_21	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0117228_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0117228_22	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0117228_22	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0117228_22	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0117228_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0117228_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0117228_22	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0117228_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117228_23	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0117228_23	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0117228_23	Structural annotation	PF04545, MF_00674, NF005248, COG1595	NA	NA
UHGV-0117228_25	PHROG	phrog_1914	NA	unknown function
UHGV-0117228_25	UniRef90	UniRef90_UPI001D0265E0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0117228_25	eggNOG-mapper	1235802.C823_05682	NA	NA
UHGV-0117228_25	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0117228_25	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0117228_25	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-0117228_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0117228_26	UniRef90	UniRef90_R5YVK6	HTH cro/C1-type domain-containing protein	NA
UHGV-0117228_26	eggNOG-mapper	1124982.MSI_24900	helix-turn-helix domain protein	NA
UHGV-0117228_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0117228_26	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0117228_26	COG	COG1426	NA	NA
UHGV-0117228_26	Structural annotation	PF13560, MF_00535, NF041951, COG1513	NA	NA
UHGV-0117228_27	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117228_27	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0117228_27	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0117228_28	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0117228_28	Structural annotation	PF19962	NA	NA
UHGV-0117228_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117228_29	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0117228_29	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0117228_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117228_29	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0117228_30	PHROG	phrog_104	portal protein	head and packaging
UHGV-0117228_30	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0117228_30	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0117228_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0117228_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0117228_31	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0117228_31	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0117228_31	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0117228_31	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0117228_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0117228_33	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0117228_33	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0117228_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0117228_33	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0117228_34	PHROG	phrog_267	major head protein	head and packaging
UHGV-0117228_34	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0117228_34	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0117228_34	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0117228_35	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0117228_35	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0117228_35	Pfam	PF09355	NA	Phage_Gp19
UHGV-0117228_35	Structural annotation	PF09355	NA	NA
UHGV-0117228_36	PHROG	phrog_501	head closure Hc1	connector
UHGV-0117228_36	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0117228_36	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0117228_37	PHROG	phrog_387	neck protein	connector
UHGV-0117228_37	UniRef90	UniRef90_Q7Y4I0	Gp44	NA
UHGV-0117228_37	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-0117228_38	PHROG	phrog_123	tail terminator	connector
UHGV-0117228_38	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-0117228_38	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-0117228_38	Structural annotation	PF06141	NA	NA
UHGV-0117228_39	PHROG	phrog_117	major tail protein	tail
UHGV-0117228_39	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-0117228_39	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0117228_39	COG	COG5492	NA	NA
UHGV-0117228_39	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0117228_40	PHROG	phrog_1526	NA	unknown function
UHGV-0117228_40	UniRef90	UniRef90_A0A0E4H642	NA	NA
UHGV-0117228_40	eggNOG-mapper	1321820.HMPREF1983_00926	NA	NA
UHGV-0117228_41	PHROG	phrog_1633	NA	unknown function
UHGV-0117228_41	UniRef90	UniRef90_UPI000CFA05B2	NA	NA
UHGV-0117228_41	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0117228_41	Pfam	PF17318	NA	DUF5361
UHGV-0117228_41	Structural annotation	PF17318	NA	NA
UHGV-0117228_42	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0117228_42	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0117228_42	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0117228_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117228_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0117228_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0117228_42	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0117228_43	PHROG	phrog_36410	NA	unknown function
UHGV-0117228_43	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-0117228_43	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0117228_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0117228_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0117228_44	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0117228_44	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0117228_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0117228_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0117228_45	PHROG	phrog_9534	head protein	head and packaging
UHGV-0117228_45	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0117228_45	Structural annotation	PF21567	NA	NA
UHGV-0117228_46	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0117228_46	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0117228_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0117228_48	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0117228_48	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0117228_48	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0117228_48	eggNOG-mapper	1382304.JNIL01000001_gene2694	G5	NA
UHGV-0117228_48	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0117228_48	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0117228_48	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0117228_49	PHROG	phrog_1863	NA	unknown function
UHGV-0117228_49	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0117228_50	PHROG	phrog_13256	NA	unknown function
UHGV-0117228_50	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA