UHGV-0117279

Genome information

Genome length 36,141 bps

CDS count 52

Completeness 79.62% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117279
vOTU ID	vOTU-042397
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_276583
BioSample	SAMEA3879571
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.86
Jumbo phage	No

Genome content
Genome length	36,141 bps
GC content	44.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.41%
Average CDS length	654.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117279_1	PHROG	phrog_87	metallo-protease	other
UHGV-0117279_1	UniRef90	UniRef90_R6WQB8	Peptidase_M78 domain-containing protein	NA
UHGV-0117279_1	eggNOG-mapper	883156.HMPREF9282_01206	NA	NA
UHGV-0117279_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0117279_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0117279_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0117279_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117279_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117279_2	UniRef90	UniRef90_R6WK78	HTH cro/C1-type domain-containing protein	NA
UHGV-0117279_2	eggNOG-mapper	1567014.A0A0A7RTR3_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0117279_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117279_2	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0117279_3	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0117279_3	UniRef90	UniRef90_A0A2C6BN81	NA	NA
UHGV-0117279_3	eggNOG-mapper	1540257.JQMW01000013_gene774	NA	NA
UHGV-0117279_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117279_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0117279_6	eggNOG-mapper	1009370.ALO_02386	LysM domain	NA
UHGV-0117279_6	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0117279_6	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0117279_8	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0117279_8	UniRef90	UniRef90_D3LVI6	Siphovirus Gp157	NA
UHGV-0117279_8	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0117279_8	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0117279_8	Structural annotation	PF05565	NA	NA
UHGV-0117279_9	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0117279_9	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-0117279_9	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0117279_9	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0117279_10	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0117279_10	Structural annotation	PF05037	NA	NA
UHGV-0117279_11	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0117279_11	UniRef90	UniRef90_UPI0008D9B52C	NA	NA
UHGV-0117279_11	eggNOG-mapper	568816.Acin_1851	NA	NA
UHGV-0117279_11	Pfam	PF06048	NA	DUF927
UHGV-0117279_11	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0117279_11	COG	COG5519	NA	NA
UHGV-0117279_11	Structural annotation	PF06048, PF18662, MF_04154, MF_01625, NF005477, COG5519, COG4643	NA	NA
UHGV-0117279_12	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0117279_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0117279_12	UniRef90	UniRef90_A0A8I2BCZ8	DEAD/DEAH box helicase family protein	NA
UHGV-0117279_12	eggNOG-mapper	568816.Acin_1846	helicase superfamily c-terminal domain	NA
UHGV-0117279_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0117279_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0117279_12	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0117279_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0117279_12	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0117279_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117279_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117279_13	UniRef90	UniRef90_UPI0009348777	VRR-NUC domain-containing protein	NA
UHGV-0117279_13	eggNOG-mapper	1231377.C426_0594	VRR_NUC	NA
UHGV-0117279_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117279_14	eggNOG-mapper	679201.HMPREF9334_00467	NA	NA
UHGV-0117279_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0117279_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0117279_16	UniRef90	UniRef90_UPI001EDE1E69	DNA cytosine methyltransferase	NA
UHGV-0117279_16	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0117279_16	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0117279_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0117279_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0117279_16	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0117279_17	Structural annotation	PF19923	NA	NA
UHGV-0117279_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0117279_21	UniRef90	UniRef90_UPI0010329B00	helix-turn-helix domain-containing protein	NA
UHGV-0117279_21	Structural annotation	PF13384	NA	NA
UHGV-0117279_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117279_22	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0117279_22	eggNOG-mapper	1262914.BN533_01942	NA	NA
UHGV-0117279_22	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0117279_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0117279_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0117279_24	UniRef90	UniRef90_UPI001DE3E585	terminase small subunit	NA
UHGV-0117279_24	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0117279_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0117279_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0117279_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0117279_25	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0117279_25	UniRef90	UniRef90_UPI001F2335B1	phage terminase large subunit	NA
UHGV-0117279_25	eggNOG-mapper	357809.Cphy_2971	TIGRFAM Phage	NA
UHGV-0117279_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0117279_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0117279_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0117279_25	COG	COG5410	NA	NA
UHGV-0117279_25	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0117279_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0117279_26	UniRef90	UniRef90_A0A378NUY6	Phage portal protein, SPP1 family	NA
UHGV-0117279_26	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0117279_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0117279_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0117279_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0117279_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0117279_27	UniRef90	UniRef90_UPI00143072B4	minor capsid protein	NA
UHGV-0117279_27	eggNOG-mapper	1123511.KB905868_gene185	Phage Mu protein F like protein	NA
UHGV-0117279_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0117279_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0117279_27	COG	COG2369	NA	NA
UHGV-0117279_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0117279_30	PHROG	phrog_29127	NA	unknown function
UHGV-0117279_30	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0117279_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0117279_32	UniRef90	UniRef90_A0A1M4V4J5	Phage minor structural protein GP20	NA
UHGV-0117279_32	eggNOG-mapper	1123511.KB905868_gene182	Phage minor structural protein GP20	NA
UHGV-0117279_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0117279_32	Structural annotation	PF06810	NA	NA
UHGV-0117279_33	PHROG	phrog_247	major head protein	head and packaging
UHGV-0117279_33	UniRef90	UniRef90_A0A2A2IK33	Coat protein	NA
UHGV-0117279_33	eggNOG-mapper	1111454.HMPREF1250_0185	NA	NA
UHGV-0117279_33	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0117279_33	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0117279_34	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0117279_34	UniRef90	UniRef90_UPI001431B9C6	phage head-tail connector protein	NA
UHGV-0117279_34	eggNOG-mapper	1123511.KB905868_gene180	NA	NA
UHGV-0117279_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0117279_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0117279_35	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0117279_35	UniRef90	UniRef90_UPI000ACDB421	ABC transporter ATP-binding protein	NA
UHGV-0117279_35	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-0117279_35	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0117279_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117279_36	UniRef90	UniRef90_UPI0014308985	HK97 gp10 family phage protein	NA
UHGV-0117279_36	eggNOG-mapper	1203606.HMPREF1526_00328	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0117279_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0117279_36	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0117279_37	PHROG	phrog_525	NA	unknown function
UHGV-0117279_37	UniRef90	UniRef90_T3DEM0	Putative phage protein	NA
UHGV-0117279_37	eggNOG-mapper	1123511.KB905868_gene177	NA	NA
UHGV-0117279_37	Pfam	PF20765	NA	DUF6838
UHGV-0117279_37	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0117279_38	PHROG	phrog_966	NA	unknown function
UHGV-0117279_39	PHROG	phrog_279	tail sheath	tail
UHGV-0117279_39	UniRef90	UniRef90_UPI00195AC914	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0117279_39	eggNOG-mapper	1123511.KB905868_gene175	Phage tail sheath C-terminal domain	NA
UHGV-0117279_39	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0117279_39	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0117279_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0117279_39	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0117279_40	PHROG	phrog_365	tail protein	tail
UHGV-0117279_40	UniRef90	UniRef90_UPI001959F06B	phage tail tube protein	NA
UHGV-0117279_40	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0117279_40	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0117279_40	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0117279_41	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0117279_41	UniRef90	UniRef90_UPI0014317D65	phage portal protein	NA
UHGV-0117279_41	eggNOG-mapper	1123511.KB905868_gene173	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0117279_41	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0117279_41	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0117279_42	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0117279_42	UniRef90	UniRef90_UPI00037C71F1	tape measure protein	NA
UHGV-0117279_42	eggNOG-mapper	1123511.KB905868_gene171	tape measure	NA
UHGV-0117279_42	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0117279_42	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0117279_42	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0117279_42	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0117279_43	PHROG	phrog_380	endolysin	lysis
UHGV-0117279_43	UniRef90	UniRef90_A0A4R1PW24	LysM domain-containing protein	NA
UHGV-0117279_43	eggNOG-mapper	1123511.KB905868_gene170	PFAM LysM domain	NA
UHGV-0117279_43	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0117279_43	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0117279_44	PHROG	phrog_400	tail protein	tail
UHGV-0117279_44	UniRef90	UniRef90_UPI0014307448	hydrolase	NA
UHGV-0117279_44	eggNOG-mapper	1123511.KB905868_gene169	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0117279_44	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0117279_44	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0117279_45	PHROG	phrog_579	NA	unknown function
UHGV-0117279_45	UniRef90	UniRef90_UPI00142F7EE5	NA	NA
UHGV-0117279_45	eggNOG-mapper	1123511.KB905868_gene168	NA	NA
UHGV-0117279_45	Pfam	PF10844	NA	DUF2577
UHGV-0117279_45	Structural annotation	PF10844	NA	NA
UHGV-0117279_46	PHROG	phrog_120	baseplate protein	tail
UHGV-0117279_46	UniRef90	UniRef90_UPI00142FA56E	NA	NA
UHGV-0117279_46	eggNOG-mapper	1123511.KB905868_gene167	NA	NA
UHGV-0117279_46	Pfam	PF10934	NA	DUF2634
UHGV-0117279_46	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0117279_46	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0117279_47	PHROG	phrog_6	baseplate protein	tail
UHGV-0117279_47	UniRef90	UniRef90_UPI00195CBEBD	baseplate J/gp47 family protein	NA
UHGV-0117279_47	eggNOG-mapper	1123511.KB905868_gene166	Baseplate J-like protein	NA
UHGV-0117279_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0117279_47	COG	COG3299	NA	NA
UHGV-0117279_47	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0117279_48	PHROG	phrog_521	tail protein	tail
UHGV-0117279_48	UniRef90	UniRef90_UPI001431708A	NA	NA
UHGV-0117279_48	eggNOG-mapper	546273.VEIDISOL_00730	NA	NA
UHGV-0117279_48	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0117279_48	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0117279_48	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0117279_49	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0117279_49	UniRef90	UniRef90_A0A1M4V6I2	Phage tail-collar fibre protein	NA
UHGV-0117279_49	eggNOG-mapper	1589751.A0A0C5AEQ0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0117279_49	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0117279_49	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0117279_49	Structural annotation	PF12571, PF19789	NA	NA
UHGV-0117279_50	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0117279_50	Structural annotation	PF14301	NA	NA
UHGV-0117279_51	KOfam	K14059	int; integrase	NA
UHGV-0117279_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0117279_51	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0117279_51	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0117279_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117279_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117279_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA