UHGV-0117305

Genome information

Genome length 36,071 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117305
vOTU ID	vOTU-000604
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_303370
BioSample	SAMEA103958164
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.53
Jumbo phage	No

Genome content
Genome length	36,071 bps
GC content	47.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.64%
Average CDS length	621.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117305_1	PHROG	phrog_5302	tail protein	tail
UHGV-0117305_1	eggNOG-mapper	411468.CLOSCI_01504	NA	NA
UHGV-0117305_1	Structural annotation	PF16323, COG3979	NA	NA
UHGV-0117305_2	PHROG	phrog_1220	head protein	head and packaging
UHGV-0117305_2	UniRef90	UniRef90_A0A174XIV6	Phage structural protein	NA
UHGV-0117305_2	eggNOG-mapper	411468.CLOSCI_00537	COG NOG18825 non supervised orthologous group	NA
UHGV-0117305_2	Structural annotation	PF13620, PF20747	NA	NA
UHGV-0117305_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0117305_3	UniRef90	UniRef90_UPI001D05F61F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0117305_3	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0117305_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0117305_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0117305_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0117305_4	UniRef90	UniRef90_A0A174WNI0	Phage tail protein	NA
UHGV-0117305_4	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0117305_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0117305_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0117305_4	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0117305_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0117305_5	UniRef90	UniRef90_A0A174WW30	Phage-related protein	NA
UHGV-0117305_5	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-0117305_5	COG	COG5412	Phage-related protein	NA
UHGV-0117305_5	Structural annotation	PF16591	NA	NA
UHGV-0117305_6	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0117305_7	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0117305_7	Structural annotation	PF17388	NA	NA
UHGV-0117305_8	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0117305_8	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0117305_9	Structural annotation	PF20765	NA	NA
UHGV-0117305_10	UniRef90	UniRef90_A0A315Y0Y7	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0117305_10	eggNOG-mapper	1123314.AUIO01000016_gene844	NA	NA
UHGV-0117305_10	Structural annotation	TIGR01725	NA	NA
UHGV-0117305_11	PHROG	phrog_19734	NA	unknown function
UHGV-0117305_11	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0117305_11	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0117305_12	PHROG	phrog_749	NA	unknown function
UHGV-0117305_12	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0117305_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0117305_13	UniRef90	UniRef90_A0A174WT45	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117305_13	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0117305_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0117305_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0117305_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117305_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0117305_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0117305_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0117305_14	UniRef90	UniRef90_A0A174WNU6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0117305_14	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0117305_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0117305_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0117305_14	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0117305_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0117305_15	UniRef90	UniRef90_A0A174WNT7	Phage portal protein, HK97 family	NA
UHGV-0117305_15	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0117305_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0117305_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0117305_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0117305_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0117305_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117305_16	UniRef90	UniRef90_A0A174WNS7	Phage terminase-like protein, large subunit	NA
UHGV-0117305_16	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0117305_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0117305_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0117305_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117305_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0117305_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0117305_17	UniRef90	UniRef90_UPI001D06BD2A	P27 family phage terminase small subunit	NA
UHGV-0117305_17	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0117305_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0117305_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0117305_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117305_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117305_18	UniRef90	UniRef90_A0A174WSZ5	Single-stranded DNA-binding protein	NA
UHGV-0117305_18	eggNOG-mapper	1280685.AUKC01000081_gene1299	Single-strand binding protein family	NA
UHGV-0117305_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117305_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117305_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117305_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0117305_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0117305_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0117305_22	PHROG	phrog_15982	NA	unknown function
UHGV-0117305_22	UniRef90	UniRef90_A0A174WNM1	ParB-like nuclease domain	NA
UHGV-0117305_22	eggNOG-mapper	411902.CLOBOL_03889	ParB-like nuclease domain	NA
UHGV-0117305_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0117305_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0117305_22	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0117305_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0117305_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0117305_23	UniRef90	UniRef90_A0A174WWX6	Sporulation initiation inhibitor protein soj	NA
UHGV-0117305_23	eggNOG-mapper	642492.Clole_0729	AAA domain	NA
UHGV-0117305_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-0117305_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0117305_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0117305_24	PHROG	phrog_824	NA	unknown function
UHGV-0117305_24	UniRef90	UniRef90_R7R192	VRR-NUC domain-containing protein	NA
UHGV-0117305_24	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0117305_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0117305_24	Structural annotation	PF08774	NA	NA
UHGV-0117305_26	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0117305_26	UniRef90	UniRef90_UPI0008488A8B	tRNA (adenine-N(6)-)-methyltransferase	NA
UHGV-0117305_26	eggNOG-mapper	1341157.RF007C_04375	NA	NA
UHGV-0117305_27	eggNOG-mapper	641112.ACOK01000119_gene1514	NA	NA
UHGV-0117305_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0117305_28	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0117305_28	Structural annotation	PF21578	NA	NA
UHGV-0117305_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0117305_29	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0117305_29	UniRef90	UniRef90_A0A3A9F3H1	Methyltransferase	NA
UHGV-0117305_29	eggNOG-mapper	97139.C824_00741	DNA methylase	NA
UHGV-0117305_29	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0117305_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0117305_29	COG	COG0863	DNA modification methylase	NA
UHGV-0117305_29	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0117305_30	PHROG	phrog_24368	NA	unknown function
UHGV-0117305_30	eggNOG-mapper	411902.CLOBOL_03886	NA	NA
UHGV-0117305_31	PHROG	phrog_24386	NA	unknown function
UHGV-0117305_31	eggNOG-mapper	622312.ROSEINA2194_03445	phosphatase activity	NA
UHGV-0117305_31	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0117305_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117305_33	PHROG	phrog_26861	NA	unknown function
UHGV-0117305_33	UniRef90	UniRef90_A0A174WND2	Helix-destabilizing protein	NA
UHGV-0117305_33	eggNOG-mapper	1121335.Clst_1307	PFAM single-strand binding protein	NA
UHGV-0117305_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117305_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117305_33	Structural annotation	PF00436, PF11506, MF_00984, NF004476, COG0629, COG3390	NA	NA
UHGV-0117305_35	PHROG	phrog_20014	NA	unknown function
UHGV-0117305_35	eggNOG-mapper	411468.CLOSCI_01473	NA	NA
UHGV-0117305_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0117305_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0117305_36	UniRef90	UniRef90_A0A3R6DF97	Cytosine-specific methyltransferase	NA
UHGV-0117305_36	eggNOG-mapper	397290.C810_00394	C-5 cytosine-specific DNA methylase	NA
UHGV-0117305_36	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0117305_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0117305_36	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0117305_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0117305_36	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0117305_38	PHROG	phrog_6058	NA	unknown function
UHGV-0117305_38	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0117305_38	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0117305_38	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0117305_39	PHROG	phrog_31560	NA	unknown function
UHGV-0117305_45	UniRef90	UniRef90_C7G6N8	DNA-binding helix-turn-helix protein	NA
UHGV-0117305_45	eggNOG-mapper	1226325.HMPREF1548_00560	NA	NA
UHGV-0117305_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117305_46	UniRef90	UniRef90_A0A6J7P3L5	Unannotated protein	NA
UHGV-0117305_46	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-0117305_47	KOfam	K14059	int; integrase	NA
UHGV-0117305_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0117305_47	UniRef90	UniRef90_A0A174WSA4	Site-specific recombinase XerD	NA
UHGV-0117305_47	eggNOG-mapper	931626.Awo_c31360	Phage integrase family	NA
UHGV-0117305_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0117305_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117305_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117305_47	Structural annotation	PF00589, MF_01808, NF002331, COG4973	NA	NA
UHGV-0117305_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0117305_49	PHROG	phrog_291	endolysin	lysis
UHGV-0117305_49	UniRef90	UniRef90_A0A174WTG1	Autolytic lysozyme	NA
UHGV-0117305_49	eggNOG-mapper	658086.HMPREF0994_03328	Glycosyl hydrolases family 25	NA
UHGV-0117305_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0117305_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0117305_49	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0117305_49	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0117305_50	PHROG	phrog_199	holin	lysis
UHGV-0117305_50	UniRef90	UniRef90_A0A174WTF2	Phage-related holin (Lysis protein)	NA
UHGV-0117305_50	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0117305_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0117305_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0117305_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0117305_51	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0117305_53	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0117305_53	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0117305_53	UniRef90	UniRef90_A0A174X0R2	Retron-type reverse transcriptase	NA
UHGV-0117305_53	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0117305_53	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0117305_53	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0117305_53	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0117305_53	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA