UHGV-0117335

Genome information

Genome length 38,939 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9540

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117335
vOTU ID	vOTU-045762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295340
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9540
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.47
Jumbo phage	No

Genome content
Genome length	38,939 bps
GC content	47.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	88.80%
Average CDS length	521.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117335_1	PHROG	phrog_16228	NA	unknown function
UHGV-0117335_1	UniRef90	UniRef90_A0A6N2ZHS5	Uma2 domain-containing protein	NA
UHGV-0117335_1	eggNOG-mapper	903814.ELI_4125	Putative restriction endonuclease	NA
UHGV-0117335_1	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0117335_1	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0117335_1	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0117335_2	PHROG	phrog_9418	NA	unknown function
UHGV-0117335_3	KOfam	K14059	int; integrase	NA
UHGV-0117335_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0117335_3	UniRef90	UniRef90_A0A6N2ZPB9	Transposase from transposon Tn916	NA
UHGV-0117335_3	eggNOG-mapper	386415.NT01CX_0843	Belongs to the 'phage' integrase family	NA
UHGV-0117335_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0117335_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117335_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117335_3	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0117335_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0117335_4	PHROG	phrog_291	endolysin	lysis
UHGV-0117335_4	UniRef90	UniRef90_A0A2A5T8U6	PG_binding_1 domain-containing protein	NA
UHGV-0117335_4	eggNOG-mapper	1127131.WEISSC39_10855	hydrolase, family 25	NA
UHGV-0117335_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0117335_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0117335_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0117335_4	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0117335_5	PHROG	phrog_199	holin	lysis
UHGV-0117335_5	UniRef90	UniRef90_A0A1I5MHX2	Toxin secretion/phage lysis holin	NA
UHGV-0117335_5	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0117335_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0117335_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0117335_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0117335_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0117335_6	PHROG	phrog_21765	NA	unknown function
UHGV-0117335_6	eggNOG-mapper	661087.HMPREF1008_00877	Collagen triple helix repeat (20 copies)	NA
UHGV-0117335_6	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0117335_8	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0117335_8	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0117335_9	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0117335_9	UniRef90	UniRef90_A0A2A5T8P9	Collagen-like protein	NA
UHGV-0117335_9	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0117335_9	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0117335_9	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0117335_10	PHROG	phrog_19280	NA	unknown function
UHGV-0117335_10	UniRef90	UniRef90_A0A6N2ZND8	BppU_N domain-containing protein	NA
UHGV-0117335_10	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0117335_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0117335_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0117335_11	UniRef90	UniRef90_A0A6N2ZS53	Prophage endopeptidase tail	NA
UHGV-0117335_11	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0117335_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0117335_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0117335_11	COG	COG4926	Phage-related protein	NA
UHGV-0117335_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0117335_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0117335_12	UniRef90	UniRef90_A0A1H0WHV5	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0117335_12	eggNOG-mapper	562981.HMPREF0428_00971	phage tail	NA
UHGV-0117335_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0117335_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0117335_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0117335_13	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0117335_13	UniRef90	UniRef90_A0A1H0WFV4	Phage-related minor tail protein (Fragment)	NA
UHGV-0117335_13	eggNOG-mapper	658655.HMPREF0988_00531	Phage-related minor tail protein	NA
UHGV-0117335_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117335_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0117335_13	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0117335_14	PHROG	phrog_709	NA	unknown function
UHGV-0117335_14	UniRef90	UniRef90_A0A1E5GU35	Rho_N domain-containing protein	NA
UHGV-0117335_14	eggNOG-mapper	1497679.EP56_05775	NA	NA
UHGV-0117335_14	Structural annotation	PF11836	NA	NA
UHGV-0117335_15	PHROG	phrog_88	major tail protein	tail
UHGV-0117335_15	UniRef90	UniRef90_A0A1H0WFC2	Phage major tail protein, phi13 family	NA
UHGV-0117335_15	eggNOG-mapper	1497679.EP56_05760	phage tail protein	NA
UHGV-0117335_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0117335_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0117335_16	PHROG	phrog_78	tail terminator	connector
UHGV-0117335_16	eggNOG-mapper	1158604.I591_01762	NA	NA
UHGV-0117335_16	Structural annotation	PF20765	NA	NA
UHGV-0117335_17	UniRef90	UniRef90_A0A1H0WFA3	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0117335_17	eggNOG-mapper	1497679.EP56_05750	NA	NA
UHGV-0117335_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0117335_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0117335_18	PHROG	phrog_19734	NA	unknown function
UHGV-0117335_18	eggNOG-mapper	610130.Closa_0746	NA	NA
UHGV-0117335_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0117335_19	PHROG	phrog_749	NA	unknown function
UHGV-0117335_19	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0117335_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0117335_20	UniRef90	UniRef90_A0A1H0WDM2	Phage major capsid protein, HK97 family	NA
UHGV-0117335_20	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0117335_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0117335_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0117335_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117335_20	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0117335_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0117335_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0117335_21	UniRef90	UniRef90_A0A4P9C7M5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0117335_21	eggNOG-mapper	1384484.AEQU_1181	Clp protease	NA
UHGV-0117335_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0117335_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0117335_21	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0117335_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0117335_22	UniRef90	UniRef90_A0A1H0WCX8	Phage portal protein, HK97 family	NA
UHGV-0117335_22	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0117335_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0117335_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0117335_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0117335_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0117335_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117335_23	UniRef90	UniRef90_A0A1H0WD12	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117335_23	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0117335_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0117335_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0117335_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117335_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0117335_24	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0117335_24	UniRef90	UniRef90_A0A1H0WCR3	Phage terminase, small subunit	NA
UHGV-0117335_24	eggNOG-mapper	926561.KB900622_gene649	NA	NA
UHGV-0117335_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0117335_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0117335_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117335_25	UniRef90	UniRef90_A0A4P9C7V2	HNH endonuclease	NA
UHGV-0117335_25	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0117335_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0117335_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0117335_28	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0117335_28	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0117335_28	UniRef90	UniRef90_A0A4P9C9V2	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0117335_28	eggNOG-mapper	1051985.l11_17040	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0117335_28	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-0117335_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0117335_28	COG	COG3392	Adenine-specific DNA methylase	NA
UHGV-0117335_29	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0117335_29	UniRef90	UniRef90_A0A6N2ZL57	HTH cro/C1-type domain-containing protein	NA
UHGV-0117335_29	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117335_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117335_29	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0117335_30	PHROG	phrog_1558	NA	unknown function
UHGV-0117335_30	UniRef90	UniRef90_A0A6N2ZQR4	HTH_11 domain-containing protein	NA
UHGV-0117335_30	eggNOG-mapper	1235802.C823_01038	NA	NA
UHGV-0117335_30	Pfam	PF08279	HTH domain	HTH_11
UHGV-0117335_30	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0117335_35	KOfam	K03700	recU; recombination protein U	NA
UHGV-0117335_35	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0117335_35	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0117335_35	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0117335_35	Pfam	PF03838	Recombination protein U	RecU
UHGV-0117335_35	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0117335_35	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0117335_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0117335_37	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0117335_37	UniRef90	UniRef90_A0A4P9C7V4	Phage antirepressor protein	NA
UHGV-0117335_37	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-0117335_37	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0117335_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0117335_37	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0117335_37	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-0117335_40	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-0117335_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0117335_41	UniRef90	UniRef90_A0A0F9KZC5	PAPS_reduct domain-containing protein (Fragment)	NA
UHGV-0117335_41	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0117335_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0117335_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0117335_42	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0117335_42	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0117335_42	Structural annotation	PF21578	NA	NA
UHGV-0117335_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117335_46	UniRef90	UniRef90_A0A1H0WAW2	Helix-turn-helix domain-containing protein	NA
UHGV-0117335_46	eggNOG-mapper	1235793.C809_01899	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117335_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117335_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0117335_46	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0117335_47	UniRef90	UniRef90_A0A1H0WBV9	Helix-turn-helix domain-containing protein	NA
UHGV-0117335_47	eggNOG-mapper	742765.HMPREF9457_03440	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117335_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117335_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117335_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0117335_56	UniRef90	UniRef90_A0A1H0WI17	DNA binding domain-containing protein, excisionase family	NA
UHGV-0117335_56	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0117335_56	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0117335_56	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0117335_60	UniRef90	UniRef90_A0A1H0WJW6	Arc-like DNA binding domain-containing protein	NA
UHGV-0117335_60	eggNOG-mapper	1151292.QEW_4373	Arc-like DNA binding domain	NA
UHGV-0117335_60	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0117335_61	UniRef90	UniRef90_A0A1H0WKU0	Ribbon-helix-helix protein, copG family	NA
UHGV-0117335_61	Pfam	PF08681	NA	DUF1778
UHGV-0117335_62	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117335_62	UniRef90	UniRef90_UPI001459F8D7	NA	NA
UHGV-0117335_62	eggNOG-mapper	525255.HMPREF0077_0960	NA	NA
UHGV-0117335_62	Structural annotation	COG2250	NA	NA
UHGV-0117335_66	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0117335_66	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0117335_66	UniRef90	UniRef90_UPI001EDD47B0	helix-turn-helix domain-containing protein	NA
UHGV-0117335_66	eggNOG-mapper	483218.BACPEC_00238	NA	NA
UHGV-0117335_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117335_66	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0117335_66	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0117335_66	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA