UHGV-0117342

Genome information

Genome length 34,511 bps

CDS count 54

Completeness 82.70% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117342
vOTU ID	vOTU-017725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_295325
BioSample	SAMEA4431894
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.9
Jumbo phage	No

Genome content
Genome length	34,511 bps
GC content	44.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.60%
Average CDS length	608.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117342_1	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0117342_2	PHROG	phrog_18725	NA	unknown function
UHGV-0117342_2	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0117342_3	PHROG	phrog_13879	NA	unknown function
UHGV-0117342_3	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0117342_3	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0117342_4	PHROG	phrog_1194	NA	unknown function
UHGV-0117342_4	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0117342_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0117342_5	PHROG	phrog_10777	NA	unknown function
UHGV-0117342_5	UniRef90	UniRef90_D3AIQ7	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0117342_5	eggNOG-mapper	1235800.C819_00523	cell adhesion	NA
UHGV-0117342_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0117342_5	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0117342_5	COG	COG2369	NA	NA
UHGV-0117342_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0117342_6	UniRef90	UniRef90_A0A174WQT6	Phage-like protein	NA
UHGV-0117342_6	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0117342_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0117342_6	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0117342_7	PHROG	phrog_2066	NA	unknown function
UHGV-0117342_7	eggNOG-mapper	562981.HMPREF0428_01812	NA	NA
UHGV-0117342_8	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0117342_8	UniRef90	UniRef90_UPI0015932736	NA	NA
UHGV-0117342_8	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0117342_8	Pfam	PF19591	NA	DUF6096
UHGV-0117342_8	Structural annotation	PF19591	NA	NA
UHGV-0117342_9	PHROG	phrog_158	major tail protein	tail
UHGV-0117342_9	UniRef90	UniRef90_A0A6N2YB08	Phage tail protein	NA
UHGV-0117342_9	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-0117342_9	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0117342_9	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0117342_10	PHROG	phrog_78	tail terminator	connector
UHGV-0117342_10	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0117342_10	Structural annotation	PF05657	NA	NA
UHGV-0117342_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117342_11	UniRef90	UniRef90_D3ATL6	Phage protein, HK97 gp10 family	NA
UHGV-0117342_11	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0117342_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0117342_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0117342_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0117342_12	PHROG	phrog_2168	NA	unknown function
UHGV-0117342_12	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0117342_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0117342_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0117342_13	UniRef90	UniRef90_UPI0006DCAE5D	phage head-tail connector protein	NA
UHGV-0117342_13	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0117342_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0117342_13	Structural annotation	PF05135	NA	NA
UHGV-0117342_14	PHROG	phrog_2724	NA	unknown function
UHGV-0117342_14	UniRef90	UniRef90_D3ATL3	Rho_N domain-containing protein	NA
UHGV-0117342_14	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0117342_14	Structural annotation	PF07498	NA	NA
UHGV-0117342_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0117342_15	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0117342_15	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0117342_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0117342_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0117342_16	UniRef90	UniRef90_A0A395YE91	NA	NA
UHGV-0117342_16	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0117342_16	Pfam	PF14265	NA	DUF4355
UHGV-0117342_16	Structural annotation	PF14265	NA	NA
UHGV-0117342_17	UniRef90	UniRef90_UPI0004D8DC63	NA	NA
UHGV-0117342_17	Structural annotation	PF11195	NA	NA
UHGV-0117342_18	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0117342_18	UniRef90	UniRef90_A0A174WL95	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0117342_18	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0117342_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0117342_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0117342_18	COG	COG2369	NA	NA
UHGV-0117342_18	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0117342_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0117342_19	UniRef90	UniRef90_A0A6N2YBG5	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0117342_19	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0117342_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0117342_19	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0117342_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0117342_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0117342_21	PHROG	phrog_10250	NA	unknown function
UHGV-0117342_21	UniRef90	UniRef90_A0A0F0C3Z2	Terminase-like family protein	NA
UHGV-0117342_21	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0117342_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0117342_21	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0117342_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0117342_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0117342_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0117342_22	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0117342_22	UniRef90	UniRef90_A0A413L434	Terminase	NA
UHGV-0117342_22	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-0117342_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0117342_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0117342_22	COG	COG5484	NA	NA
UHGV-0117342_22	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0117342_24	PHROG	phrog_21589	NA	unknown function
UHGV-0117342_24	UniRef90	UniRef90_U5S2Z7	PemK family protein	NA
UHGV-0117342_24	eggNOG-mapper	431943.CKL_0478	NA	NA
UHGV-0117342_24	AcrCatalog	cluster_7454	NA	NA
UHGV-0117342_24	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0117342_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117342_27	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0117342_27	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0117342_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0117342_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0117342_29	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0117342_29	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0117342_29	UniRef90	UniRef90_D3AS57	SF4 helicase domain-containing protein	NA
UHGV-0117342_29	eggNOG-mapper	1232453.BAIF02000057_gene1145	DNA replication initiation	NA
UHGV-0117342_29	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0117342_29	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0117342_29	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0117342_30	PHROG	phrog_9804	NA	unknown function
UHGV-0117342_30	UniRef90	UniRef90_A0A174WQ87	Inhibitor_G39P domain-containing protein	NA
UHGV-0117342_30	eggNOG-mapper	697281.Mahau_0086	Loader and inhibitor of phage G40P	NA
UHGV-0117342_30	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0117342_31	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0117342_31	UniRef90	UniRef90_A0A413WRD4	Phage_rep_org_N domain-containing protein	NA
UHGV-0117342_31	eggNOG-mapper	1235793.C809_02194	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0117342_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0117342_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0117342_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0117342_31	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0117342_38	PHROG	phrog_16724	NA	unknown function
UHGV-0117342_38	eggNOG-mapper	1084719.G3MBK2_9CAUD	endonuclease activity	NA
UHGV-0117342_39	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-0117342_39	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0117342_39	UniRef90	UniRef90_A0A174WY28	AbrB family transcriptional regulator	NA
UHGV-0117342_39	eggNOG-mapper	1298920.KI911353_gene2736	SpoVT / AbrB like domain	NA
UHGV-0117342_39	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0117342_39	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0117342_39	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0117342_39	Structural annotation	PF02381, TIGR01439, COG2002	NA	NA
UHGV-0117342_42	eggNOG-mapper	1304866.K413DRAFT_0797	NA	NA
UHGV-0117342_45	UniRef90	UniRef90_A0A413LWC0	DNA-binding protein	NA
UHGV-0117342_45	eggNOG-mapper	697329.Rumal_2679	NA	NA
UHGV-0117342_45	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0117342_46	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0117342_46	UniRef90	UniRef90_D3ANR6	Toxin-antitoxin system, toxin component, Bro family	NA
UHGV-0117342_46	eggNOG-mapper	1151292.QEW_0741	NA	NA
UHGV-0117342_46	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0117342_46	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0117342_46	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-0117342_47	PHROG	phrog_6329	NA	unknown function
UHGV-0117342_47	UniRef90	UniRef90_A0A174WZW0	NA	NA
UHGV-0117342_47	eggNOG-mapper	279010.BL03487	NA	NA
UHGV-0117342_48	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0117342_48	UniRef90	UniRef90_A0A413LWE0	ORF6N domain-containing protein	NA
UHGV-0117342_48	eggNOG-mapper	290633.GOX2440	ORF6N domain	NA
UHGV-0117342_48	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0117342_48	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0117342_49	UniRef90	UniRef90_A0A6N3HMA5	Helix-turn-helix domain protein	NA
UHGV-0117342_49	eggNOG-mapper	478749.BRYFOR_07571	NA	NA
UHGV-0117342_49	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0117342_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117342_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117342_50	UniRef90	UniRef90_A0A373INN4	XRE family transcriptional regulator	NA
UHGV-0117342_50	eggNOG-mapper	526218.Sterm_3926	sequence-specific DNA binding	NA
UHGV-0117342_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117342_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117342_51	UniRef90	UniRef90_A0A4R8V7F7	NA	NA
UHGV-0117342_51	eggNOG-mapper	457421.CBFG_03484	repeat protein	NA
UHGV-0117342_51	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0117342_51	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0117342_52	KOfam	K14059	int; integrase	NA
UHGV-0117342_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0117342_52	UniRef90	UniRef90_A0A413WR83	Site-specific integrase	NA
UHGV-0117342_52	eggNOG-mapper	397288.C806_02995	Phage integrase family	NA
UHGV-0117342_52	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0117342_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117342_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117342_52	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA