UHGV-0117421

Genome information

vOTU vOTU-061983

Genome length 61,989 bps

CDS count 88

Completeness 99.19% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117421
vOTU ID	vOTU-061983
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284116
BioSample	SAMEA4378278
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.95
Jumbo phage	No

Genome content
Genome length	61,989 bps
GC content	46.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	88
CDS density	94.14%
Average CDS length	666.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117421_1	PHROG	phrog_9854	NA	unknown function
UHGV-0117421_1	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0117421_1	eggNOG-mapper	401526.TcarDRAFT_1293	protein secretion by the type IV secretion system	NA
UHGV-0117421_1	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0117421_1	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0117421_1	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0117421_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0117421_1	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0117421_2	eggNOG-mapper	76869.PputGB1_1758	NA	NA
UHGV-0117421_3	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0117421_3	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0117421_3	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0117421_3	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0117421_4	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0117421_5	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-0117421_5	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0117421_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0117421_7	PHROG	phrog_291	endolysin	lysis
UHGV-0117421_7	UniRef90	UniRef90_A0A1M6N739	Glycosyl hydrolases family 25	NA
UHGV-0117421_7	eggNOG-mapper	1485543.JMME01000005_gene885	lysozyme activity	NA
UHGV-0117421_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0117421_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0117421_7	Structural annotation	PF01183, MF_00134_A, NF007266, COG3757	NA	NA
UHGV-0117421_8	PHROG	phrog_28789	NA	unknown function
UHGV-0117421_8	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0117421_8	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0117421_9	PHROG	phrog_4105	NA	unknown function
UHGV-0117421_9	eggNOG-mapper	706434.HMPREF9429_00642	NA	NA
UHGV-0117421_10	KOfam	K14059	int; integrase	NA
UHGV-0117421_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0117421_10	UniRef90	UniRef90_A0A641X3J6	Tyrosine-type recombinase/integrase	NA
UHGV-0117421_10	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0117421_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117421_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117421_10	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0117421_11	PHROG	phrog_6465	tail protein	tail
UHGV-0117421_11	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0117421_11	eggNOG-mapper	568816.Acin_1822	Collagen triple helix repeat (20 copies)	NA
UHGV-0117421_11	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0117421_12	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0117421_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0117421_13	PHROG	phrog_5717	tail protein	tail
UHGV-0117421_13	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0117421_13	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0117421_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0117421_14	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0117421_14	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0117421_15	PHROG	phrog_5417	NA	unknown function
UHGV-0117421_15	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0117421_15	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0117421_15	Structural annotation	PF12571	NA	NA
UHGV-0117421_16	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0117421_16	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0117421_16	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0117421_17	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0117421_17	Structural annotation	PF20387	NA	NA
UHGV-0117421_18	Structural annotation	PF20387	NA	NA
UHGV-0117421_20	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0117421_20	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0117421_20	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0117421_20	Pfam	PF17236	NA	DUF5309
UHGV-0117421_20	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0117421_21	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0117421_23	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0117421_23	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0117421_23	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0117421_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0117421_23	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0117421_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0117421_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0117421_24	UniRef90	UniRef90_A0A6M3IX88	Putative terminase	NA
UHGV-0117421_24	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0117421_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0117421_24	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0117421_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0117421_25	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0117421_25	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-0117421_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0117421_25	Structural annotation	PF07141	NA	NA
UHGV-0117421_26	PHROG	phrog_1233	NA	unknown function
UHGV-0117421_26	UniRef90	UniRef90_UPI000C850486	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0117421_26	eggNOG-mapper	1540257.JQMW01000009_gene3748	NA	NA
UHGV-0117421_26	Structural annotation	PF13058	NA	NA
UHGV-0117421_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117421_28	UniRef90	UniRef90_A0A2H2XSX5	Bacteriophage protein homolog	NA
UHGV-0117421_28	eggNOG-mapper	1410624.JNKK01000065_gene1264	NA	NA
UHGV-0117421_29	PHROG	phrog_11282	NA	unknown function
UHGV-0117421_29	eggNOG-mapper	78398.KS43_19510	NA	NA
UHGV-0117421_30	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0117421_31	PHROG	phrog_15863	NA	unknown function
UHGV-0117421_31	UniRef90	UniRef90_A0A1U7M9V5	Chaperone protein DnaJ	NA
UHGV-0117421_31	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-0117421_31	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0117421_35	PHROG	phrog_14350	NA	unknown function
UHGV-0117421_35	UniRef90	UniRef90_F7NK80	NA	NA
UHGV-0117421_35	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0117421_36	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117421_36	UniRef90	UniRef90_A0A316L5V7	AP2/ERF domain-containing protein	NA
UHGV-0117421_36	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0117421_36	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0117421_37	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0117421_37	eggNOG-mapper	158190.SpiGrapes_2456	radical SAM domain protein	NA
UHGV-0117421_37	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0117421_37	Structural annotation	MF_01865, NF038361, COG0621	NA	NA
UHGV-0117421_38	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0117421_38	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0117421_41	PHROG	phrog_3878	NA	unknown function
UHGV-0117421_43	PHROG	phrog_774	NA	unknown function
UHGV-0117421_45	PHROG	phrog_419	NA	unknown function
UHGV-0117421_45	UniRef90	UniRef90_A0A7U6KCT4	NA	NA
UHGV-0117421_45	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0117421_45	Structural annotation	PF14083	NA	NA
UHGV-0117421_51	PHROG	phrog_2776	NA	unknown function
UHGV-0117421_51	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0117421_52	PHROG	phrog_11947	NA	unknown function
UHGV-0117421_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0117421_53	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0117421_53	UniRef90	UniRef90_A0A413QUD9	Cytosine-specific methyltransferase	NA
UHGV-0117421_53	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0117421_53	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0117421_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0117421_53	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0117421_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0117421_53	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0117421_54	PHROG	phrog_1672	NA	unknown function
UHGV-0117421_54	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-0117421_59	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0117421_59	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0117421_62	PHROG	phrog_37395	NA	unknown function
UHGV-0117421_64	PHROG	phrog_236	nucleotide kinase	other
UHGV-0117421_64	UniRef90	UniRef90_UPI000DA60B0D	NA	NA
UHGV-0117421_64	eggNOG-mapper	1209989.TepiRe1_2623	NA	NA
UHGV-0117421_64	Pfam	PF11753	NA	DUF3310
UHGV-0117421_66	PHROG	phrog_4074	NA	unknown function
UHGV-0117421_66	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0117421_66	Structural annotation	TIGR04550	NA	NA
UHGV-0117421_67	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0117421_67	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0117421_67	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0117421_67	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0117421_67	Pfam	PF00692	dUTPase	dUTPase
UHGV-0117421_67	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0117421_67	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0117421_67	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0117421_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117421_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117421_69	UniRef90	UniRef90_A0A355U095	Single-stranded DNA-binding protein	NA
UHGV-0117421_69	eggNOG-mapper	706434.HMPREF9429_00712	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0117421_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117421_69	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117421_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117421_69	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0117421_69	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0117421_70	PHROG	phrog_9804	NA	unknown function
UHGV-0117421_70	UniRef90	UniRef90_A0A1C5TFI8	Inhibitor_G39P domain-containing protein	NA
UHGV-0117421_70	eggNOG-mapper	97138.C820_00774	Loader and inhibitor of phage G40P	NA
UHGV-0117421_70	AcrCatalog	cluster_137185	NA	NA
UHGV-0117421_70	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0117421_70	Structural annotation	PF11417	NA	NA
UHGV-0117421_71	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0117421_71	UniRef90	UniRef90_R2QIV7	DnaD domain-containing protein	NA
UHGV-0117421_71	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0117421_71	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0117421_71	Structural annotation	PF09681, MF_01177, TIGR01714, COG1846	NA	NA
UHGV-0117421_72	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0117421_72	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117421_72	UniRef90	UniRef90_A0A2S0M9D0	HNHc domain-containing protein	NA
UHGV-0117421_72	eggNOG-mapper	1174528.JH992892_gene6517	reverse transcriptase	NA
UHGV-0117421_72	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0117421_72	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0117421_72	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0117421_73	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0117421_73	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0117421_73	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0117421_74	PHROG	phrog_7792	NA	unknown function
UHGV-0117421_74	UniRef90	UniRef90_UPI001D07B780	RAD52 family DNA repair protein	NA
UHGV-0117421_74	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0117421_75	PHROG	phrog_674	NA	unknown function
UHGV-0117421_75	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0117421_75	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0117421_75	Pfam	PF07083	NA	DUF1351
UHGV-0117421_79	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0117421_79	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0117421_80	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0117421_80	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0117421_80	UniRef90	UniRef90_UPI0014759289	phage antirepressor	NA
UHGV-0117421_80	eggNOG-mapper	578234.B8R674_9CAUD	DNA binding	NA
UHGV-0117421_80	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0117421_80	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0117421_80	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0117421_81	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-0117421_81	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117421_81	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117421_81	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0117421_83	UniRef90	UniRef90_A0A848EX22	Helix-turn-helix transcriptional regulator	NA
UHGV-0117421_83	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117421_83	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0117421_83	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0117421_84	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0117421_84	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117421_84	UniRef90	UniRef90_UPI001474792D	helix-turn-helix domain-containing protein	NA
UHGV-0117421_84	eggNOG-mapper	1232428.CAVO010000067_gene444	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117421_84	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0117421_84	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117421_84	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0117421_84	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0117421_85	PHROG	phrog_87	metallo-protease	other
UHGV-0117421_85	UniRef90	UniRef90_A0A1M6P4K0	Peptidase_M78 domain-containing protein	NA
UHGV-0117421_85	eggNOG-mapper	1123489.AUAN01000010_gene379	IrrE N-terminal-like domain	NA
UHGV-0117421_85	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0117421_85	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0117421_85	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0117421_88	KOfam	K14059	int; integrase	NA
UHGV-0117421_88	PHROG	phrog_1	integrase	integration and excision
UHGV-0117421_88	UniRef90	UniRef90_A0A2S0M9C1	Site-specific integrase	NA
UHGV-0117421_88	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0117421_88	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117421_88	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117421_88	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA