UHGV-0117432

Genome information

Genome length 30,257 bps

CDS count 38

Completeness 99.90% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117432
vOTU ID	vOTU-011643
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_281853
BioSample	SAMEA3888917
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.12
Jumbo phage	No

Genome content
Genome length	30,257 bps
GC content	35.65%
Genetic code	Blepharisma nuclear code (15)
CDS count	38
CDS density	89.76%
Average CDS length	718.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117432_1	eggNOG-mapper	411476.BACOVA_02151	NA	NA
UHGV-0117432_2	PHROG	phrog_1501	NA	unknown function
UHGV-0117432_2	UniRef90	UniRef90_A0A843GJJ8	NA	NA
UHGV-0117432_2	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0117432_2	Pfam	PF18925	NA	DUF5675
UHGV-0117432_2	Structural annotation	PF18925	NA	NA
UHGV-0117432_3	UniRef90	UniRef90_UPI0004833697	YrzE family protein	NA
UHGV-0117432_4	PHROG	phrog_1800	tail collar fiber protein	tail
UHGV-0117432_4	eggNOG-mapper	1408813.AYMG01000010_gene413	tail collar domain protein	NA
UHGV-0117432_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0117432_5	eggNOG-mapper	908937.Prede_1343	NA	NA
UHGV-0117432_5	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0117432_6	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0117432_6	UniRef90	UniRef90_A0A1Q6GPG9	Phage tail tape measure protein	NA
UHGV-0117432_6	eggNOG-mapper	1453496.AT03_15205	COG5281, Phage-related minor tail protein	NA
UHGV-0117432_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117432_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0117432_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0117432_6	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0117432_8	eggNOG-mapper	908937.Prede_1347	NA	NA
UHGV-0117432_8	Structural annotation	PF11836	NA	NA
UHGV-0117432_9	PHROG	phrog_1407	major tail protein	tail
UHGV-0117432_9	UniRef90	UniRef90_UPI000DFD5B0C	phage tail tube protein	NA
UHGV-0117432_9	eggNOG-mapper	1236517.BAKO01000013_gene1445	Phage tail tube protein	NA
UHGV-0117432_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0117432_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0117432_10	PHROG	phrog_347	tail terminator	connector
UHGV-0117432_10	UniRef90	UniRef90_UPI000E03762E	NA	NA
UHGV-0117432_10	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0117432_10	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0117432_11	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0117432_11	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0117432_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0117432_12	UniRef90	UniRef90_D7IS77	Phage head-tail adaptor	NA
UHGV-0117432_12	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-0117432_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0117432_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0117432_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0117432_13	UniRef90	UniRef90_A0A316RGV0	Phage gp6-like head-tail connector protein	NA
UHGV-0117432_13	eggNOG-mapper	908937.Prede_1352	Phage gp6-like head-tail connector protein	NA
UHGV-0117432_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0117432_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0117432_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0117432_14	PHROG	phrog_617	major head protein	head and packaging
UHGV-0117432_14	UniRef90	UniRef90_A0A3R6IXJ0	Phage major capsid protein	NA
UHGV-0117432_14	eggNOG-mapper	908937.Prede_1353	Phage capsid family	NA
UHGV-0117432_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0117432_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0117432_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117432_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0117432_15	KOfam	K06904	NA	NA
UHGV-0117432_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0117432_15	UniRef90	UniRef90_A0A496C2C5	HK97 family phage prohead protease	NA
UHGV-0117432_15	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0117432_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0117432_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0117432_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0117432_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0117432_24	PHROG	phrog_13589	NA	unknown function
UHGV-0117432_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0117432_25	UniRef90	UniRef90_D7IS83	Phage portal protein, HK97 family	NA
UHGV-0117432_25	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-0117432_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0117432_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0117432_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0117432_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0117432_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117432_26	UniRef90	UniRef90_D7IS84	Phage terminase large subunit	NA
UHGV-0117432_26	eggNOG-mapper	1122931.AUAE01000036_gene1072	Phage Terminase	NA
UHGV-0117432_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0117432_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0117432_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117432_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0117432_27	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0117432_28	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0117432_28	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0117432_28	UniRef90	UniRef90_A0A2I7RMP9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0117432_28	eggNOG-mapper	1327970.R9ZXR7_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0117432_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0117432_28	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0117432_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0117432_29	UniRef90	UniRef90_D7IS85	Phage terminase, small subunit, P27 family	NA
UHGV-0117432_29	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-0117432_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0117432_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0117432_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0117432_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0117432_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117432_32	UniRef90	UniRef90_A0A3E4T2C3	HNH endonuclease	NA
UHGV-0117432_32	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0117432_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0117432_33	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117432_33	UniRef90	UniRef90_A0A8F1B5A1	Putative HNH endonuclease	NA
UHGV-0117432_33	eggNOG-mapper	1173745.A0A059TA03_9CAUD	HNH endonuclease	NA
UHGV-0117432_33	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0117432_33	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0117432_33	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0117432_33	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0117432_34	UniRef90	UniRef90_UPI00051B04F9	DEAD/DEAH box helicase family protein	NA
UHGV-0117432_34	eggNOG-mapper	226186.BT_2983	NA	NA
UHGV-0117432_34	Structural annotation	PF02399, MF_00965, TIGR00614, COG1201	NA	NA
UHGV-0117432_35	eggNOG-mapper	1347393.HG726020_gene906	NA	NA
UHGV-0117432_35	Structural annotation	PF12187, MF_01490, NF040854, COG1591	NA	NA
UHGV-0117432_38	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0117432_38	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0117432_38	UniRef90	UniRef90_R6X2M5	Methyltransferase	NA
UHGV-0117432_38	eggNOG-mapper	866771.HMPREF9296_1285	N-4 methylation of cytosine	NA
UHGV-0117432_38	PADLOC	oMTase_00003	orphan methyltransferase	RM
UHGV-0117432_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0117432_38	COG	COG0863	DNA modification methylase	NA
UHGV-0117432_38	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA