UHGV-0117473

Genome information

Genome length 35,539 bps

CDS count 53

Completeness 86.59% (medium-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117473
vOTU ID	vOTU-039419
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287777
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.95
Jumbo phage	No

Genome content
Genome length	35,539 bps
GC content	45.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.31%
Average CDS length	610.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117473_1	PHROG	phrog_7854	endolysin	lysis
UHGV-0117473_1	UniRef90	UniRef90_A0A174X6J3	Lipoprotein	NA
UHGV-0117473_1	eggNOG-mapper	1128398.Curi_c22020	cell wall binding repeat	NA
UHGV-0117473_1	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0117473_1	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0117473_2	PHROG	phrog_1847	NA	unknown function
UHGV-0117473_2	UniRef90	UniRef90_UPI001A9BB89E	GIY-YIG nuclease family protein	NA
UHGV-0117473_2	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0117473_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0117473_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0117473_2	Structural annotation	PF19962, MF_01506	NA	NA
UHGV-0117473_3	eggNOG-mapper	483218.BACPEC_01182	T5orf172	NA
UHGV-0117473_3	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0117473_4	PHROG	phrog_87	metallo-protease	other
UHGV-0117473_4	UniRef90	UniRef90_UPI001F2CA0C0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0117473_4	eggNOG-mapper	1499683.CCFF01000014_gene3571	IrrE N-terminal-like domain	NA
UHGV-0117473_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0117473_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0117473_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0117473_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0117473_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117473_5	UniRef90	UniRef90_UPI001C3E45C8	helix-turn-helix transcriptional regulator	NA
UHGV-0117473_5	eggNOG-mapper	1304866.K413DRAFT_1181	addiction module antidote protein HigA	NA
UHGV-0117473_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117473_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0117473_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0117473_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0117473_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117473_6	UniRef90	UniRef90_UPI001F367BD9	helix-turn-helix domain-containing protein	NA
UHGV-0117473_6	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0117473_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117473_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0117473_7	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-0117473_7	UniRef90	UniRef90_UPI001F205E2C	phage antirepressor N-terminal domain-containing protein	NA
UHGV-0117473_7	eggNOG-mapper	742738.HMPREF9460_01348	P22_AR N-terminal domain	NA
UHGV-0117473_7	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0117473_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0117473_7	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0117473_10	PHROG	phrog_6329	NA	unknown function
UHGV-0117473_10	UniRef90	UniRef90_A0A174WZW0	NA	NA
UHGV-0117473_10	eggNOG-mapper	279010.BL03487	NA	NA
UHGV-0117473_11	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0117473_11	UniRef90	UniRef90_UPI00189F0205	helix-turn-helix transcriptional regulator	NA
UHGV-0117473_11	eggNOG-mapper	1235790.C805_02349	Transcriptional regulator	NA
UHGV-0117473_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117473_11	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0117473_12	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0117473_12	UniRef90	UniRef90_A0A3A6HSM7	P22_AR_N domain-containing protein	NA
UHGV-0117473_12	eggNOG-mapper	1033740.CAEW01000026_gene500	P22_AR N-terminal domain	NA
UHGV-0117473_12	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-0117473_12	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0117473_12	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0117473_16	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0117473_16	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0117473_16	UniRef90	UniRef90_N9XIF8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0117473_16	eggNOG-mapper	742735.HMPREF9467_02386	Sigma-70, region 4	NA
UHGV-0117473_16	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0117473_16	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0117473_16	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0117473_16	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0117473_16	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0117473_16	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0117473_16	Structural annotation	PF04545, PF04542, PF04539, MF_00963, NF006666, COG0568	NA	NA
UHGV-0117473_17	PHROG	phrog_7134	NA	unknown function
UHGV-0117473_17	UniRef90	UniRef90_A0A1W6BMZ4	Pathogenicity island protein	NA
UHGV-0117473_17	eggNOG-mapper	411902.CLOBOL_06678	NA	NA
UHGV-0117473_17	Structural annotation	PF13601	NA	NA
UHGV-0117473_18	UniRef90	UniRef90_UPI0007431C58	YcxB family protein	NA
UHGV-0117473_21	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0117473_21	UniRef90	UniRef90_UPI001D09145F	bifunctional DNA primase/polymerase	NA
UHGV-0117473_21	eggNOG-mapper	411902.CLOBOL_06670	NA	NA
UHGV-0117473_21	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0117473_21	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0117473_21	Pfam	PF06048	NA	DUF927
UHGV-0117473_21	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0117473_21	COG	COG5519	NA	NA
UHGV-0117473_21	Structural annotation	PF06048, PF18662, MF_00016, NF005477, COG5519, COG4643	NA	NA
UHGV-0117473_24	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0117473_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117473_25	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0117473_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0117473_25	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0117473_28	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0117473_28	UniRef90	UniRef90_A0A3E2WBX1	XRE family transcriptional regulator	NA
UHGV-0117473_28	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117473_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117473_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0117473_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0117473_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0117473_30	UniRef90	UniRef90_A0A3E2WBT1	Terminase small subunit	NA
UHGV-0117473_30	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0117473_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0117473_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0117473_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0117473_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0117473_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0117473_31	UniRef90	UniRef90_A0A1C7G6C9	Terminase	NA
UHGV-0117473_31	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0117473_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0117473_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0117473_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0117473_32	UniRef90	UniRef90_A0A1C7G7K7	Capsid protein	NA
UHGV-0117473_32	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0117473_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0117473_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0117473_33	UniRef90	UniRef90_UPI001F33ADFE	phage minor capsid protein	NA
UHGV-0117473_33	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0117473_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0117473_33	COG	COG2369	NA	NA
UHGV-0117473_33	Structural annotation	PF06152	NA	NA
UHGV-0117473_35	PHROG	phrog_419	NA	unknown function
UHGV-0117473_35	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-0117473_35	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-0117473_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0117473_36	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0117473_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0117473_37	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0117473_37	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0117473_37	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0117473_38	PHROG	phrog_1378	NA	unknown function
UHGV-0117473_38	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0117473_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0117473_39	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0117473_40	PHROG	phrog_8710	NA	unknown function
UHGV-0117473_40	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0117473_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0117473_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0117473_41	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0117473_42	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0117473_42	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0117473_42	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0117473_42	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0117473_42	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0117473_43	PHROG	phrog_820	major tail protein	tail
UHGV-0117473_43	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0117473_43	COG	COG5492	NA	NA
UHGV-0117473_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0117473_44	PHROG	phrog_8300	NA	unknown function
UHGV-0117473_44	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0117473_44	Structural annotation	PF06854	NA	NA
UHGV-0117473_45	PHROG	phrog_8355	NA	unknown function
UHGV-0117473_45	UniRef90	UniRef90_UPI001D07612A	bacteriophage Gp15 family protein	NA
UHGV-0117473_45	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0117473_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0117473_45	Structural annotation	PF06854	NA	NA
UHGV-0117473_46	PHROG	phrog_6417	translational regulator	other
UHGV-0117473_46	UniRef90	UniRef90_A0A414ASC6	Com family DNA-binding transcriptional regulator	NA
UHGV-0117473_46	eggNOG-mapper	536233.CLO_1576	Mu-like prophage protein Com	NA
UHGV-0117473_46	Pfam	PF10122	NA	Mu-like_Com
UHGV-0117473_46	NCBIFam	TIGR02098.1	MJ0042-type zinc finger domain-containing protein	NA
UHGV-0117473_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0117473_47	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0117473_47	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0117473_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0117473_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0117473_48	PHROG	phrog_1194	NA	unknown function
UHGV-0117473_48	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0117473_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0117473_49	PHROG	phrog_13879	NA	unknown function
UHGV-0117473_49	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0117473_49	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0117473_50	PHROG	phrog_18725	NA	unknown function
UHGV-0117473_50	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0117473_51	eggNOG-mapper	585501.HMPREF6123_0821	NA	NA
UHGV-0117473_52	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-0117473_52	COG	COG1196	Chromosome segregation ATPase Smc	NA