UHGV-0117477

Genome information

Genome length 39,589 bps

CDS count 63

Completeness 68.62% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117477
vOTU ID	vOTU-034549
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_291698
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.58
Jumbo phage	No

Genome content
Genome length	39,589 bps
GC content	47.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	85.02%
Average CDS length	536.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117477_1	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0117477_1	UniRef90	UniRef90_UPI00130EB09C	ERF family protein	NA
UHGV-0117477_1	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0117477_1	Pfam	PF04404	ERF superfamily	ERF
UHGV-0117477_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117477_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117477_2	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0117477_2	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0117477_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117477_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117477_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117477_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0117477_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0117477_3	PHROG	phrog_4572	NA	unknown function
UHGV-0117477_3	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0117477_5	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0117477_5	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0117477_5	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0117477_5	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0117477_9	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0117477_12	Structural annotation	PF16677	NA	NA
UHGV-0117477_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117477_18	PHROG	phrog_11947	NA	unknown function
UHGV-0117477_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117477_18	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0117477_23	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0117477_23	Pfam	PF19808	NA	DUF6291
UHGV-0117477_23	Structural annotation	PF19808	NA	NA
UHGV-0117477_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0117477_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0117477_24	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0117477_24	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0117477_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0117477_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-0117477_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0117477_26	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0117477_26	UniRef90	UniRef90_A0A1Y3SW45	RepA_N domain-containing protein (Fragment)	NA
UHGV-0117477_26	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0117477_26	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0117477_26	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0117477_26	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0117477_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0117477_32	PHROG	phrog_14275	NA	unknown function
UHGV-0117477_32	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0117477_32	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0117477_32	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0117477_33	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0117477_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0117477_35	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0117477_35	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0117477_35	eggNOG-mapper	416870.llmg_0797	ORF6C domain	NA
UHGV-0117477_35	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0117477_35	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0117477_35	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0117477_35	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0117477_36	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0117477_38	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0117477_38	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0117477_39	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0117477_39	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0117477_39	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0117477_39	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0117477_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0117477_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0117477_39	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0117477_40	Structural annotation	NF009949	NA	NA
UHGV-0117477_41	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0117477_41	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0117477_41	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0117477_41	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0117477_41	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0117477_41	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0117477_41	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0117477_42	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0117477_42	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0117477_42	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0117477_42	COG	COG5410	NA	NA
UHGV-0117477_42	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0117477_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0117477_44	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0117477_44	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0117477_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0117477_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0117477_48	PHROG	phrog_29	major head protein	head and packaging
UHGV-0117477_48	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0117477_48	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0117477_48	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0117477_48	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0117477_49	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0117477_49	Structural annotation	TIGR01560	NA	NA
UHGV-0117477_50	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0117477_50	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0117477_52	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0117477_53	PHROG	phrog_158	major tail protein	tail
UHGV-0117477_53	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0117477_53	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0117477_53	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0117477_54	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0117477_54	Pfam	PF16478	NA	DUF5055
UHGV-0117477_54	Structural annotation	PF16478	NA	NA
UHGV-0117477_55	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0117477_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0117477_56	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0117477_56	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0117477_57	PHROG	phrog_1194	NA	unknown function
UHGV-0117477_57	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0117477_57	Pfam	PF20458	NA	DUF6711
UHGV-0117477_57	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0117477_58	PHROG	phrog_6616	tail protein	tail
UHGV-0117477_58	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-0117477_58	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0117477_60	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0117477_60	PHROG	phrog_11541	NA	unknown function
UHGV-0117477_60	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0117477_60	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0117477_60	Structural annotation	PF13472, NF007819, COG2755	NA	NA
UHGV-0117477_61	KOfam	K07273	acm; lysozyme	NA
UHGV-0117477_61	PHROG	phrog_291	endolysin	lysis
UHGV-0117477_61	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0117477_61	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0117477_61	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0117477_61	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0117477_61	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0117477_62	PHROG	phrog_1863	NA	unknown function
UHGV-0117477_62	eggNOG-mapper	718252.FP2_04900	NA	NA