UHGV-0117549

Genome information

Genome length 41,882 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117549
vOTU ID	vOTU-063472
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309729
BioSample	SAMEA37107418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.69
Jumbo phage	No

Genome content
Genome length	41,882 bps
GC content	39.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.22%
Average CDS length	617.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117549_1	KOfam	K03722	dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]	NA
UHGV-0117549_1	PHROG	phrog_16128	NA	unknown function
UHGV-0117549_1	UniRef90	UniRef90_A0A2U2EE06	Helicase ATP-binding domain-containing protein	NA
UHGV-0117549_1	eggNOG-mapper	1408324.JNJK01000048_gene422	HELICc2	NA
UHGV-0117549_1	Pfam	PF00270	DEAD/DEAH box helicase	DEAD
UHGV-0117549_1	Pfam	PF13307	Helicase C-terminal domain	Helicase_C_2
UHGV-0117549_1	COG	COG1199	Rad3-related DNA helicase DinG	NA
UHGV-0117549_4	PHROG	phrog_31631	NA	unknown function
UHGV-0117549_6	eggNOG-mapper	411459.RUMOBE_01712	NA	NA
UHGV-0117549_6	Structural annotation	PF19087, NF033202	NA	NA
UHGV-0117549_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0117549_7	PHROG	phrog_435	endolysin	lysis
UHGV-0117549_7	UniRef90	UniRef90_A0A564TJ46	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0117549_7	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0117549_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0117549_7	Pfam	PF13946	NA	DUF4214
UHGV-0117549_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0117549_7	Structural annotation	PF01520, PF13946, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0117549_8	PHROG	phrog_443	holin	lysis
UHGV-0117549_8	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0117549_8	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0117549_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0117549_8	Structural annotation	PF16945	NA	NA
UHGV-0117549_9	PHROG	phrog_1863	NA	unknown function
UHGV-0117549_9	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0117549_10	PHROG	phrog_16573	NA	unknown function
UHGV-0117549_10	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0117549_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0117549_11	PHROG	phrog_11105	NA	unknown function
UHGV-0117549_12	PHROG	phrog_18110	NA	unknown function
UHGV-0117549_12	UniRef90	UniRef90_UPI001D08457A	phage tail protein	NA
UHGV-0117549_12	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0117549_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0117549_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0117549_12	COG	COG4926	Phage-related protein	NA
UHGV-0117549_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0117549_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0117549_13	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0117549_13	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0117549_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0117549_13	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0117549_14	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0117549_14	UniRef90	UniRef90_A0A3R6TZG0	Phage tail tape measure protein	NA
UHGV-0117549_14	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0117549_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117549_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0117549_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0117549_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0117549_15	PHROG	phrog_25901	NA	unknown function
UHGV-0117549_15	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-0117549_16	PHROG	phrog_13494	NA	unknown function
UHGV-0117549_16	eggNOG-mapper	411459.RUMOBE_01727	NA	NA
UHGV-0117549_16	Structural annotation	PF16462	NA	NA
UHGV-0117549_17	PHROG	phrog_88	major tail protein	tail
UHGV-0117549_17	UniRef90	UniRef90_A0A417VGN7	Major tail protein	NA
UHGV-0117549_17	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0117549_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0117549_17	COG	COG5492	NA	NA
UHGV-0117549_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0117549_18	PHROG	phrog_78	tail terminator	connector
UHGV-0117549_18	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0117549_18	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0117549_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117549_19	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0117549_19	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0117549_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0117549_19	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0117549_20	UniRef90	UniRef90_A0A417VGC6	Phage head-tail adapter protein	NA
UHGV-0117549_20	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0117549_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0117549_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0117549_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0117549_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0117549_21	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-0117549_21	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0117549_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0117549_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0117549_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0117549_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0117549_22	UniRef90	UniRef90_A0A3R6YBY5	Phage major capsid protein	NA
UHGV-0117549_22	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117549_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0117549_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0117549_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117549_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0117549_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0117549_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0117549_23	UniRef90	UniRef90_A0A417VFW3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0117549_23	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-0117549_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0117549_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0117549_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0117549_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0117549_24	UniRef90	UniRef90_A0A3R6XLQ1	Phage portal protein	NA
UHGV-0117549_24	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0117549_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0117549_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0117549_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0117549_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0117549_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117549_25	UniRef90	UniRef90_A0A417VH15	Terminase large subunit	NA
UHGV-0117549_25	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0117549_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0117549_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0117549_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117549_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0117549_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0117549_26	UniRef90	UniRef90_A0A417VG35	Phage terminase small subunit P27 family	NA
UHGV-0117549_26	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0117549_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0117549_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0117549_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0117549_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0117549_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117549_27	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-0117549_27	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0117549_28	PHROG	phrog_1558	NA	unknown function
UHGV-0117549_28	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0117549_28	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0117549_29	UniRef90	UniRef90_A0A356C4K0	Chemotaxis protein	NA
UHGV-0117549_29	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0117549_29	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0117549_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117549_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117549_31	UniRef90	UniRef90_A0A417QWS3	Single-stranded DNA-binding protein	NA
UHGV-0117549_31	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-0117549_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117549_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117549_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117549_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0117549_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0117549_32	PHROG	phrog_1315	NA	unknown function
UHGV-0117549_32	Structural annotation	TIGR00310	NA	NA
UHGV-0117549_33	PHROG	phrog_25456	NA	unknown function
UHGV-0117549_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0117549_35	PHROG	phrog_15982	NA	unknown function
UHGV-0117549_35	UniRef90	UniRef90_A0A494WRE3	Nucleoid occlusion protein	NA
UHGV-0117549_35	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0117549_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0117549_35	Pfam	PF12961	NA	DUF3850
UHGV-0117549_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0117549_35	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0117549_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0117549_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0117549_37	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0117549_37	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0117549_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0117549_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0117549_37	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0117549_38	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0117549_40	PHROG	phrog_824	NA	unknown function
UHGV-0117549_40	UniRef90	UniRef90_A0A494WKS7	VRR-NUC domain-containing protein	NA
UHGV-0117549_40	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0117549_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0117549_41	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0117549_41	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0117549_41	Structural annotation	PF21578	NA	NA
UHGV-0117549_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0117549_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117549_43	UniRef90	UniRef90_A0A3A8Y625	XRE family transcriptional regulator	NA
UHGV-0117549_43	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117549_43	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0117549_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117549_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0117549_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0117549_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117549_44	UniRef90	UniRef90_A0A3A8YMR6	XRE family transcriptional regulator	NA
UHGV-0117549_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117549_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0117549_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0117549_45	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0117549_45	UniRef90	UniRef90_A0A4S2AEU6	NA	NA
UHGV-0117549_45	Pfam	PF14359	NA	DUF4406
UHGV-0117549_45	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0117549_46	Pfam	PF18941	NA	DUF5688
UHGV-0117549_49	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0117549_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117549_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117549_57	UniRef90	UniRef90_A0A417QX81	XRE family transcriptional regulator	NA
UHGV-0117549_57	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0117549_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117549_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117549_57	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0117549_58	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0117549_58	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0117549_58	UniRef90	UniRef90_UPI000F0B7031	3'-5' exoribonuclease	NA
UHGV-0117549_58	eggNOG-mapper	1243664.CAVL020000010_gene4579	3' exoribonuclease, RNase T-like	NA
UHGV-0117549_58	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0117549_58	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0117549_58	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0117549_58	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0117549_58	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0117549_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0117549_59	PHROG	phrog_95	integrase	integration and excision
UHGV-0117549_59	UniRef90	UniRef90_A0A3R6WU62	Site-specific recombinase	NA
UHGV-0117549_59	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0117549_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0117549_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0117549_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0117549_59	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0117549_60	eggNOG-mapper	1391647.AVSV01000022_gene2552	HELICc2	NA
UHGV-0117549_60	COG	COG1199	Rad3-related DNA helicase DinG	NA
UHGV-0117549_62	KOfam	K07535	badH; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]	NA
UHGV-0117549_62	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0117549_62	UniRef90	UniRef90_A0A0S2W1C6	D-mannonate oxidoreductase	NA
UHGV-0117549_62	eggNOG-mapper	1235792.C808_04594	Enoyl-(Acyl carrier protein) reductase	NA
UHGV-0117549_62	Pfam	PF00106	short chain dehydrogenase	adh_short
UHGV-0117549_62	NCBIFam	NF006132.0	D-mannonate oxidoreductase	NA
UHGV-0117549_62	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA
UHGV-0117549_62	Structural annotation	PF13561, MF_01647, NF004198, COG1028	NA	NA