UHGV-0117559

Genome information

Genome length 25,506 bps

CDS count 35

Completeness 65.65% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117559
vOTU ID	vOTU-036788
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285822
BioSample	SAMEA4378306
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.35
Jumbo phage	No

Genome content
Genome length	25,506 bps
GC content	39.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.37%
Average CDS length	692.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117559_1	PHROG	phrog_14030	NA	unknown function
UHGV-0117559_1	UniRef90	UniRef90_UPI0018972B9E	peptidoglycan-binding protein	NA
UHGV-0117559_1	eggNOG-mapper	457412.RSAG_02810	NlpC/P60 family	NA
UHGV-0117559_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0117559_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0117559_1	Structural annotation	PF05382, PF01471, NF033742, NF038080, COG3409, COG0791	NA	NA
UHGV-0117559_2	PHROG	phrog_37799	NA	unknown function
UHGV-0117559_2	UniRef90	UniRef90_UPI00156F2401	phage holin family protein	NA
UHGV-0117559_2	eggNOG-mapper	1151292.QEW_0990	Bacteriophage holin family	NA
UHGV-0117559_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0117559_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0117559_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0117559_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0117559_4	PHROG	phrog_28526	NA	unknown function
UHGV-0117559_4	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0117559_4	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0117559_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0117559_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0117559_6	UniRef90	UniRef90_A0A374JNY7	Reverse transcriptase domain-containing protein	NA
UHGV-0117559_6	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0117559_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0117559_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0117559_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0117559_6	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0117559_7	PHROG	phrog_17147	NA	unknown function
UHGV-0117559_7	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0117559_7	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0117559_8	PHROG	phrog_16164	NA	unknown function
UHGV-0117559_8	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0117559_8	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0117559_11	PHROG	phrog_6616	tail protein	tail
UHGV-0117559_11	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0117559_11	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0117559_11	COG	COG4926	Phage-related protein	NA
UHGV-0117559_11	Structural annotation	PF05113, PF18957, NF033848, NF038186, COG4379, COG5513	NA	NA
UHGV-0117559_12	PHROG	phrog_1194	NA	unknown function
UHGV-0117559_12	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0117559_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0117559_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0117559_13	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0117559_13	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0117559_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0117559_13	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0117559_14	PHROG	phrog_3845	NA	unknown function
UHGV-0117559_14	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0117559_14	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0117559_14	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0117559_14	Structural annotation	PF13248	NA	NA
UHGV-0117559_15	PHROG	phrog_8355	NA	unknown function
UHGV-0117559_15	UniRef90	UniRef90_UPI000E5D9789	Gp15 family bacteriophage protein	NA
UHGV-0117559_15	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0117559_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0117559_15	Structural annotation	PF06854	NA	NA
UHGV-0117559_16	PHROG	phrog_8300	NA	unknown function
UHGV-0117559_16	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0117559_16	Structural annotation	PF06854	NA	NA
UHGV-0117559_17	PHROG	phrog_820	major tail protein	tail
UHGV-0117559_17	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0117559_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0117559_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0117559_18	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0117559_18	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0117559_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0117559_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0117559_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0117559_19	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0117559_20	PHROG	phrog_8710	NA	unknown function
UHGV-0117559_20	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0117559_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0117559_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0117559_21	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0117559_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0117559_22	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0117559_22	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0117559_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0117559_23	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0117559_23	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0117559_24	PHROG	phrog_13199	NA	unknown function
UHGV-0117559_24	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0117559_25	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0117559_25	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0117559_25	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0117559_25	Structural annotation	PF14359	NA	NA
UHGV-0117559_26	PHROG	phrog_918	NA	unknown function
UHGV-0117559_26	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0117559_26	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0117559_26	Pfam	PF19791	NA	DUF6275
UHGV-0117559_26	Structural annotation	PF19791	NA	NA
UHGV-0117559_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0117559_29	UniRef90	UniRef90_UPI001D086335	minor capsid protein	NA
UHGV-0117559_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0117559_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0117559_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0117559_29	Structural annotation	PF06152	NA	NA
UHGV-0117559_30	PHROG	phrog_25639	NA	unknown function
UHGV-0117559_30	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0117559_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0117559_31	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0117559_31	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0117559_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0117559_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0117559_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0117559_32	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0117559_32	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0117559_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0117559_32	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0117559_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0117559_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0117559_33	UniRef90	UniRef90_UPI001C0332B0	terminase small subunit	NA
UHGV-0117559_33	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0117559_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0117559_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0117559_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0117559_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117559_34	UniRef90	UniRef90_UPI001C0ED9E5	NA	NA
UHGV-0117559_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA