UHGV-0117772

Genome information

Genome length 35,035 bps

CDS count 51

Completeness 92.53% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117772
vOTU ID	vOTU-078496
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_275705
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.88
Jumbo phage	No

Genome content
Genome length	35,035 bps
GC content	43.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.66%
Average CDS length	625.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117772_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0117772_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0117772_1	UniRef90	UniRef90_A5KP69	Resolvase, N-terminal domain protein	NA
UHGV-0117772_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0117772_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0117772_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0117772_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0117772_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0117772_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0117772_2	PHROG	phrog_87	metallo-protease	other
UHGV-0117772_2	UniRef90	UniRef90_A0A828SYD0	Peptidase_M78 domain-containing protein	NA
UHGV-0117772_2	eggNOG-mapper	658655.HMPREF0988_02595	Zn peptidase	NA
UHGV-0117772_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0117772_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0117772_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0117772_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117772_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117772_3	UniRef90	UniRef90_UPI001D0888D5	helix-turn-helix domain-containing protein	NA
UHGV-0117772_3	eggNOG-mapper	742723.HMPREF9477_00937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0117772_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117772_3	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0117772_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117772_4	UniRef90	UniRef90_A0A174BA24	Helix-turn-helix	NA
UHGV-0117772_4	eggNOG-mapper	742723.HMPREF9477_00936	Helix-turn-helix	NA
UHGV-0117772_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117772_4	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0117772_6	PHROG	phrog_3240	NA	unknown function
UHGV-0117772_6	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-0117772_9	PHROG	phrog_22934	NA	unknown function
UHGV-0117772_10	PHROG	phrog_34638	NA	unknown function
UHGV-0117772_10	Structural annotation	COG1965	NA	NA
UHGV-0117772_11	PHROG	phrog_3777	NA	unknown function
UHGV-0117772_11	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0117772_11	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0117772_11	Pfam	PF12957	NA	DUF3846
UHGV-0117772_11	Structural annotation	PF12957	NA	NA
UHGV-0117772_12	PHROG	phrog_674	NA	unknown function
UHGV-0117772_12	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0117772_12	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0117772_12	Pfam	PF07083	NA	DUF1351
UHGV-0117772_12	Structural annotation	PF07083	NA	NA
UHGV-0117772_13	PHROG	phrog_21649	NA	unknown function
UHGV-0117772_13	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0117772_13	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0117772_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0117772_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117772_13	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0117772_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117772_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117772_14	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0117772_14	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0117772_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117772_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117772_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117772_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0117772_14	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0117772_15	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0117772_15	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0117772_15	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0117772_15	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0117772_15	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0117772_16	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0117772_16	PHROG	phrog_11992	NA	unknown function
UHGV-0117772_16	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0117772_16	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0117772_16	PADLOC	drt-UG29	DRT	DRT
UHGV-0117772_16	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0117772_16	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0117772_16	Structural annotation	PF01807	NA	NA
UHGV-0117772_17	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0117772_17	UniRef90	UniRef90_A0A1C5YVP9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0117772_17	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0117772_17	Pfam	PF06048	NA	DUF927
UHGV-0117772_17	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0117772_17	COG	COG5519	NA	NA
UHGV-0117772_17	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0117772_18	PHROG	phrog_23374	NA	unknown function
UHGV-0117772_19	eggNOG-mapper	1235792.C808_05406	NA	NA
UHGV-0117772_19	Structural annotation	MF_00773, NF041909, COG2888	NA	NA
UHGV-0117772_20	PHROG	phrog_15077	NA	unknown function
UHGV-0117772_20	UniRef90	UniRef90_A0A354J797	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0117772_20	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0117772_20	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0117772_21	PHROG	phrog_30671	NA	unknown function
UHGV-0117772_21	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-0117772_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117772_22	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0117772_22	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0117772_22	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0117772_23	PHROG	phrog_13899	NA	unknown function
UHGV-0117772_23	UniRef90	UniRef90_A0A1C6F5B0	TIR domain-containing protein	NA
UHGV-0117772_23	eggNOG-mapper	36874.HQ34_09795	TIR domain	NA
UHGV-0117772_23	PADLOC	TIR_TM	NA	NA
UHGV-0117772_23	Pfam	PF13676	TIR domain	TIR_2
UHGV-0117772_24	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0117772_24	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0117772_24	UniRef90	UniRef90_A0A828SZY9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0117772_24	eggNOG-mapper	1232452.BAIB02000007_gene1633	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0117772_24	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0117772_24	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0117772_24	COG	COG0338	DNA-adenine methylase	NA
UHGV-0117772_24	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0117772_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0117772_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0117772_25	UniRef90	UniRef90_A0A1Y4RLJ9	Terminase small subunit	NA
UHGV-0117772_25	eggNOG-mapper	476272.RUMHYD_02844	Terminase Small Subunit	NA
UHGV-0117772_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0117772_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0117772_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0117772_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0117772_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0117772_26	UniRef90	UniRef90_A0A828SUY2	Phage terminase large subunit	NA
UHGV-0117772_26	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-0117772_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0117772_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0117772_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0117772_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0117772_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0117772_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0117772_27	UniRef90	UniRef90_A0A828SVT3	Phage portal protein	NA
UHGV-0117772_27	eggNOG-mapper	1209989.TepiRe1_1145	phage portal protein, SPP1	NA
UHGV-0117772_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0117772_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0117772_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0117772_28	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0117772_28	UniRef90	UniRef90_A0A828SR54	Phage_Mu_F domain-containing protein	NA
UHGV-0117772_28	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0117772_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0117772_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0117772_28	COG	COG2369	NA	NA
UHGV-0117772_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0117772_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0117772_31	UniRef90	UniRef90_UPI000C76E206	phage scaffolding protein	NA
UHGV-0117772_31	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-0117772_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0117772_31	Structural annotation	PF06810	NA	NA
UHGV-0117772_32	PHROG	phrog_267	major head protein	head and packaging
UHGV-0117772_32	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-0117772_32	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-0117772_32	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0117772_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0117772_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0117772_33	UniRef90	UniRef90_UPI000C75BAD8	phage head-tail connector protein	NA
UHGV-0117772_33	eggNOG-mapper	1123405.AUMM01000039_gene148	Phage gp6-like head-tail connector protein	NA
UHGV-0117772_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0117772_33	Structural annotation	PF05135	NA	NA
UHGV-0117772_34	UniRef90	UniRef90_A0A828SZY0	Phage head-tail adaptor	NA
UHGV-0117772_34	eggNOG-mapper	411468.CLOSCI_00284	NA	NA
UHGV-0117772_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0117772_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0117772_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117772_35	UniRef90	UniRef90_UPI001C3BB077	HK97 gp10 family phage protein	NA
UHGV-0117772_35	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0117772_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0117772_35	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0117772_36	Structural annotation	PF12691	NA	NA
UHGV-0117772_37	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0117772_37	eggNOG-mapper	411468.CLOSCI_00281	NA	NA
UHGV-0117772_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0117772_38	Structural annotation	PF16462	NA	NA
UHGV-0117772_39	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0117772_39	UniRef90	UniRef90_A0A828SZM0	PhageMin_Tail domain-containing protein	NA
UHGV-0117772_39	eggNOG-mapper	411468.CLOSCI_00278	phage tail tape measure protein	NA
UHGV-0117772_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117772_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0117772_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0117772_39	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0117772_40	eggNOG-mapper	742723.HMPREF9477_00896	NA	NA
UHGV-0117772_40	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0117772_41	PHROG	phrog_538	minor tail protein	tail
UHGV-0117772_41	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0117772_41	eggNOG-mapper	742765.HMPREF9457_03374	NA	NA
UHGV-0117772_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0117772_41	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0117772_42	PHROG	phrog_13141	NA	unknown function
UHGV-0117772_42	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0117772_42	eggNOG-mapper	411460.RUMTOR_02097	NA	NA
UHGV-0117772_42	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0117772_43	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0117772_43	eggNOG-mapper	553973.CLOHYLEM_05669	to Mitochondrial intermediate peptidase K01410	NA
UHGV-0117772_43	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0117772_44	PHROG	phrog_30034	NA	unknown function
UHGV-0117772_44	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0117772_44	eggNOG-mapper	665950.HMPREF1025_02518	NA	NA
UHGV-0117772_46	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0117772_46	PHROG	phrog_11157	NA	unknown function
UHGV-0117772_46	UniRef90	UniRef90_UPI0006C53CD4	Ig-like domain-containing protein	NA
UHGV-0117772_46	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0117772_46	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0117772_46	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0117772_46	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0117772_46	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0117772_48	eggNOG-mapper	411461.DORFOR_01184	NA	NA
UHGV-0117772_48	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0117772_49	PHROG	phrog_1863	NA	unknown function
UHGV-0117772_49	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0117772_50	PHROG	phrog_443	holin	lysis
UHGV-0117772_50	UniRef90	UniRef90_UPI001C3AE2A9	Holin	NA
UHGV-0117772_50	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0117772_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0117772_50	Structural annotation	PF16945	NA	NA
UHGV-0117772_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0117772_51	PHROG	phrog_291	endolysin	lysis
UHGV-0117772_51	UniRef90	UniRef90_A0A173YXL7	N-acetylmuramoyl-L-alanine amidase sle1	NA
UHGV-0117772_51	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0117772_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0117772_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0117772_51	Structural annotation	PF01183, NF002575, COG3757	NA	NA