UHGV-0117815

Genome information

Genome length 41,791 bps

CDS count 56

Completeness 92.71% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117815
vOTU ID	vOTU-062293
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292888
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	87.45
Jumbo phage	No

Genome content
Genome length	41,791 bps
GC content	49.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.63%
Average CDS length	688.23 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117815_1	PHROG	phrog_199	holin	lysis
UHGV-0117815_1	UniRef90	UniRef90_UPI001EF57100	phage holin family protein	NA
UHGV-0117815_1	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0117815_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0117815_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0117815_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0117815_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0117815_4	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0117815_4	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0117815_4	eggNOG-mapper	1401067.HMPREF0872_03390	tail collar domain protein	NA
UHGV-0117815_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0117815_4	Structural annotation	PF12571	NA	NA
UHGV-0117815_5	PHROG	phrog_521	tail protein	tail
UHGV-0117815_5	UniRef90	UniRef90_UPI000F8F5AA4	NA	NA
UHGV-0117815_5	eggNOG-mapper	546273.VEIDISOL_00730	NA	NA
UHGV-0117815_5	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0117815_5	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0117815_5	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0117815_6	PHROG	phrog_6	baseplate protein	tail
UHGV-0117815_6	UniRef90	UniRef90_A0A2A2ILD2	Baseplate_J domain-containing protein	NA
UHGV-0117815_6	eggNOG-mapper	1111454.HMPREF1250_0160	Baseplate J-like protein	NA
UHGV-0117815_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0117815_6	COG	COG3299	NA	NA
UHGV-0117815_6	Structural annotation	PF04865, PF21379, MF_04102, COG3299	NA	NA
UHGV-0117815_7	PHROG	phrog_120	baseplate protein	tail
UHGV-0117815_7	UniRef90	UniRef90_UPI001960E59F	NA	NA
UHGV-0117815_7	eggNOG-mapper	546273.VEIDISOL_00728	NA	NA
UHGV-0117815_7	Pfam	PF10934	NA	DUF2634
UHGV-0117815_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0117815_7	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0117815_8	PHROG	phrog_579	NA	unknown function
UHGV-0117815_8	UniRef90	UniRef90_UPI0005675F76	NA	NA
UHGV-0117815_8	eggNOG-mapper	546273.VEIDISOL_00727	NA	NA
UHGV-0117815_8	Pfam	PF10844	NA	DUF2577
UHGV-0117815_8	Structural annotation	PF10844	NA	NA
UHGV-0117815_9	PHROG	phrog_400	tail protein	tail
UHGV-0117815_9	UniRef90	UniRef90_U7UPQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0117815_9	eggNOG-mapper	883156.HMPREF9282_00657	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0117815_9	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0117815_9	Structural annotation	PF14594, PF05382, NF033848, COG4379	NA	NA
UHGV-0117815_10	PHROG	phrog_380	endolysin	lysis
UHGV-0117815_10	UniRef90	UniRef90_A0A496P7P0	Peptidoglycan-binding protein	NA
UHGV-0117815_10	eggNOG-mapper	546273.VEIDISOL_00725	PFAM LysM domain	NA
UHGV-0117815_10	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0117815_10	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0117815_11	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0117815_11	UniRef90	UniRef90_A0A2A2IKN9	TMP_3 domain-containing protein	NA
UHGV-0117815_11	eggNOG-mapper	1111454.HMPREF1250_0164	tape measure	NA
UHGV-0117815_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0117815_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0117815_11	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0117815_11	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0117815_12	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0117815_12	UniRef90	UniRef90_R5SN61	XkdN-like protein	NA
UHGV-0117815_12	eggNOG-mapper	1111454.HMPREF1250_0166	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0117815_12	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0117815_13	PHROG	phrog_365	tail protein	tail
UHGV-0117815_13	UniRef90	UniRef90_UPI001D068A7F	phage tail tube protein	NA
UHGV-0117815_13	eggNOG-mapper	1111454.HMPREF1250_0167	Phage tail tube protein	NA
UHGV-0117815_13	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0117815_13	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0117815_14	PHROG	phrog_279	tail sheath	tail
UHGV-0117815_14	UniRef90	UniRef90_A0A2A2IJB2	Phage tail protein	NA
UHGV-0117815_14	eggNOG-mapper	546273.VEIDISOL_00720	Phage tail sheath C-terminal domain	NA
UHGV-0117815_14	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0117815_14	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0117815_14	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0117815_14	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0117815_16	PHROG	phrog_525	NA	unknown function
UHGV-0117815_16	UniRef90	UniRef90_F2JK36	NA	NA
UHGV-0117815_16	eggNOG-mapper	1111454.HMPREF1250_0170	NA	NA
UHGV-0117815_16	Pfam	PF20765	NA	DUF6838
UHGV-0117815_16	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0117815_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117815_17	UniRef90	UniRef90_U7UPM8	Tail protein, HK97 family	NA
UHGV-0117815_17	eggNOG-mapper	1111454.HMPREF1250_0171	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0117815_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0117815_17	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0117815_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0117815_18	UniRef90	UniRef90_A9KQ07	NA	NA
UHGV-0117815_18	eggNOG-mapper	1111454.HMPREF1250_0172	NA	NA
UHGV-0117815_18	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0117815_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0117815_19	eggNOG-mapper	1111454.HMPREF1250_0173	NA	NA
UHGV-0117815_19	Structural annotation	PF05135	NA	NA
UHGV-0117815_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0117815_20	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0117815_20	eggNOG-mapper	888060.HMPREF9081_1550	NA	NA
UHGV-0117815_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0117815_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0117815_21	UniRef90	UniRef90_U7UPM3	Phage minor structural protein GP20	NA
UHGV-0117815_21	eggNOG-mapper	1111454.HMPREF1250_0176	Phage minor structural protein GP20	NA
UHGV-0117815_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0117815_21	Structural annotation	PF06810	NA	NA
UHGV-0117815_22	PHROG	phrog_3675	NA	unknown function
UHGV-0117815_22	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0117815_22	eggNOG-mapper	1123304.AQYA01000037_gene218	YjcQ protein	NA
UHGV-0117815_22	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0117815_22	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0117815_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0117815_23	UniRef90	UniRef90_UPI001D06CDF6	minor capsid protein	NA
UHGV-0117815_23	eggNOG-mapper	1111454.HMPREF1250_0178	Phage Mu protein F like protein	NA
UHGV-0117815_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0117815_23	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0117815_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0117815_23	COG	COG2369	NA	NA
UHGV-0117815_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0117815_24	UniRef90	UniRef90_A0A6L6TPX1	Phage portal protein	NA
UHGV-0117815_24	eggNOG-mapper	546273.VEIDISOL_00711	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0117815_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0117815_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0117815_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0117815_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0117815_25	UniRef90	UniRef90_A0A2A2IJV7	Terminase	NA
UHGV-0117815_25	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0117815_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0117815_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0117815_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0117815_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0117815_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0117815_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0117815_26	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0117815_26	UniRef90	UniRef90_A0A1M6P1M7	Phage terminase small subunit	NA
UHGV-0117815_26	eggNOG-mapper	568816.Acin_1387	Terminase small subunit	NA
UHGV-0117815_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0117815_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0117815_26	Structural annotation	PF03592, PF06056, COG3728	NA	NA
UHGV-0117815_27	PHROG	phrog_31162	NA	unknown function
UHGV-0117815_27	UniRef90	UniRef90_UPI0015C12473	NA	NA
UHGV-0117815_27	eggNOG-mapper	313594.PI23P_06091	NA	NA
UHGV-0117815_27	Pfam	PF18928	NA	DUF5677
UHGV-0117815_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117815_28	UniRef90	UniRef90_UPI001D004827	NA	NA
UHGV-0117815_28	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-0117815_28	Pfam	PF07374	NA	DUF1492
UHGV-0117815_29	PHROG	phrog_11947	NA	unknown function
UHGV-0117815_30	PHROG	phrog_37395	NA	unknown function
UHGV-0117815_32	eggNOG-mapper	1232428.CAVO010000021_gene811	NA	NA
UHGV-0117815_33	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0117815_33	UniRef90	UniRef90_UPI0019578D90	NA	NA
UHGV-0117815_33	eggNOG-mapper	679201.HMPREF9334_00466	NA	NA
UHGV-0117815_33	Pfam	PF06048	NA	DUF927
UHGV-0117815_33	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0117815_33	COG	COG5519	NA	NA
UHGV-0117815_33	Structural annotation	PF06048, PF16793, PF18662, MF_00700, NF040561, TIGR00368, COG5519, COG1467	NA	NA
UHGV-0117815_34	KOfam	K03581	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	NA
UHGV-0117815_34	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0117815_34	UniRef90	UniRef90_UPI00195A002F	AAA family ATPase	NA
UHGV-0117815_34	eggNOG-mapper	1510531.JQJJ01000008_gene3825	UvrD-like helicase C-terminal domain	NA
UHGV-0117815_34	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0117815_34	Pfam	PF13604	AAA domain	AAA_30
UHGV-0117815_34	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-0117815_34	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0117815_34	Structural annotation	PF13604, MF_01488, TIGR01448, COG0507	NA	NA
UHGV-0117815_35	UniRef90	UniRef90_UPI00195D2645	VRR-NUC domain-containing protein	NA
UHGV-0117815_35	eggNOG-mapper	679201.HMPREF9334_00465	VRR-NUC domain	NA
UHGV-0117815_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0117815_35	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0117815_36	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0117815_36	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0117815_36	UniRef90	UniRef90_UPI00195DA21F	DEAD/DEAH box helicase	NA
UHGV-0117815_36	eggNOG-mapper	1121428.DESHY_20120___1	type III restriction enzyme, res subunit	NA
UHGV-0117815_36	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0117815_36	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0117815_36	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0117815_36	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0117815_36	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0117815_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0117815_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117815_37	UniRef90	UniRef90_UPI0019594668	single-stranded DNA-binding protein	NA
UHGV-0117815_37	eggNOG-mapper	679201.HMPREF9334_00463	single-stranded DNA binding	NA
UHGV-0117815_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0117815_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0117815_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0117815_37	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0117815_38	PHROG	phrog_1366	NA	unknown function
UHGV-0117815_38	UniRef90	UniRef90_UPI001956347D	AAA family ATPase	NA
UHGV-0117815_38	eggNOG-mapper	1123288.SOV_1c03840	AAA domain	NA
UHGV-0117815_38	Pfam	PF13479	AAA domain	AAA_24
UHGV-0117815_38	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0117815_39	PHROG	phrog_674	NA	unknown function
UHGV-0117815_39	UniRef90	UniRef90_UPI0019577DA3	NA	NA
UHGV-0117815_39	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0117815_39	Pfam	PF07083	NA	DUF1351
UHGV-0117815_39	Structural annotation	PF07083	NA	NA
UHGV-0117815_40	PHROG	phrog_633	transcriptional regulator	transcription regulation
UHGV-0117815_40	Structural annotation	PF04703, MF_00732, NF033788, COG2345	NA	NA
UHGV-0117815_43	PHROG	phrog_31924	NA	unknown function
UHGV-0117815_43	Structural annotation	COG3831	NA	NA
UHGV-0117815_45	eggNOG-mapper	1273103.NM10_02382	transposase activity	NA
UHGV-0117815_45	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0117815_45	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0117815_46	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0117815_46	UniRef90	UniRef90_A0A2A2IMZ0	HTH cro/C1-type domain-containing protein	NA
UHGV-0117815_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0117815_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117815_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0117815_49	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0117815_49	UniRef90	UniRef90_UPI0018C7AF31	NA	NA
UHGV-0117815_49	eggNOG-mapper	706434.HMPREF9429_00177	NA	NA
UHGV-0117815_49	Structural annotation	PF06573	NA	NA
UHGV-0117815_51	UniRef90	UniRef90_A0A847V1D4	NA	NA
UHGV-0117815_51	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0117815_51	Pfam	PF05339	NA	DUF739
UHGV-0117815_51	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0117815_51	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0117815_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0117815_52	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0117815_52	UniRef90	UniRef90_A0A2A2IPT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0117815_52	eggNOG-mapper	1111454.HMPREF1250_1030	Helix-turn-helix domain protein	NA
UHGV-0117815_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117815_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117815_52	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0117815_53	PHROG	phrog_20936	NA	unknown function
UHGV-0117815_53	UniRef90	UniRef90_A0A2A2IND4	Peptidase_M78 domain-containing protein	NA
UHGV-0117815_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0117815_53	Structural annotation	PF06114	NA	NA
UHGV-0117815_54	PHROG	phrog_5978	NA	unknown function
UHGV-0117815_54	UniRef90	UniRef90_A0A1G7XE35	Fic family protein	NA
UHGV-0117815_54	eggNOG-mapper	1321781.HMPREF1985_01901	filamentation induced by cAMP protein Fic	NA
UHGV-0117815_54	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0117815_54	COG	COG3177	Fic family protein	NA
UHGV-0117815_54	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0117815_55	KOfam	K14059	int; integrase	NA
UHGV-0117815_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0117815_55	UniRef90	UniRef90_A0A2A2IML8	Site-specific integrase	NA
UHGV-0117815_55	eggNOG-mapper	1273103.NM10_02432	Phage integrase family	NA
UHGV-0117815_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0117815_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117815_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0117815_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA