UHGV-0117966

Genome information

Genome length 30,591 bps

CDS count 47

Completeness 91.44% (high-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0117966
vOTU ID	vOTU-061441
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308411
BioSample	SAMEA37128418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.15
Jumbo phage	No

Genome content
Genome length	30,591 bps
GC content	31.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.19%
Average CDS length	610.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0117966_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0117966_3	UniRef90	UniRef90_A0A412CHD7	NA	NA
UHGV-0117966_3	eggNOG-mapper	927704.SELR_11170	DNA-templated transcription, initiation	NA
UHGV-0117966_3	Pfam	PF07374	NA	DUF1492
UHGV-0117966_3	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0117966_3	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-0117966_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0117966_7	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0117966_7	UniRef90	UniRef90_A0A412CHN3	HNH endonuclease	NA
UHGV-0117966_7	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0117966_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0117966_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0117966_8	PHROG	phrog_1066	NA	unknown function
UHGV-0117966_8	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-0117966_8	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0117966_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0117966_9	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0117966_9	eggNOG-mapper	1134413.ANNK01000054_gene2231	Terminase	NA
UHGV-0117966_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0117966_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0117966_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0117966_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0117966_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0117966_10	UniRef90	UniRef90_UPI00142FCB51	phage portal protein	NA
UHGV-0117966_10	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-0117966_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0117966_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0117966_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0117966_11	KOfam	K06904	NA	NA
UHGV-0117966_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0117966_11	UniRef90	UniRef90_A0A412CHQ0	HK97 family phage prohead protease	NA
UHGV-0117966_11	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0117966_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0117966_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0117966_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0117966_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0117966_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0117966_12	UniRef90	UniRef90_UPI000E53779F	phage major capsid protein	NA
UHGV-0117966_12	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0117966_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0117966_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0117966_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0117966_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0117966_13	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0117966_13	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0117966_13	UniRef90	UniRef90_A0A412CHG4	Collagen-like protein	NA
UHGV-0117966_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0117966_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0117966_14	UniRef90	UniRef90_A0A412CHC9	Phage gp6-like head-tail connector protein	NA
UHGV-0117966_14	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-0117966_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0117966_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0117966_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0117966_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-0117966_15	UniRef90	UniRef90_UPI001CD5F5A7	phage head closure protein	NA
UHGV-0117966_15	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-0117966_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0117966_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0117966_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0117966_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0117966_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0117966_16	UniRef90	UniRef90_A0A412CI38	HK97 gp10 family phage protein	NA
UHGV-0117966_16	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0117966_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0117966_16	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0117966_17	PHROG	phrog_525	NA	unknown function
UHGV-0117966_17	Pfam	PF20765	NA	DUF6838
UHGV-0117966_17	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0117966_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0117966_18	UniRef90	UniRef90_A0A412CH32	Phage tail sheath protein	NA
UHGV-0117966_18	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0117966_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0117966_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0117966_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0117966_19	PHROG	phrog_365	tail protein	tail
UHGV-0117966_19	UniRef90	UniRef90_A0A412CHD4	Phage portal protein	NA
UHGV-0117966_19	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0117966_19	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0117966_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0117966_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0117966_20	UniRef90	UniRef90_A0A7Y2PM55	XkdN-like protein	NA
UHGV-0117966_20	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0117966_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0117966_20	Structural annotation	PF08890	NA	NA
UHGV-0117966_21	PHROG	phrog_2722	NA	unknown function
UHGV-0117966_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0117966_22	UniRef90	UniRef90_UPI00187699E2	phage tail tape measure protein	NA
UHGV-0117966_22	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0117966_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0117966_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0117966_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0117966_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0117966_23	PHROG	phrog_5184	NA	unknown function
UHGV-0117966_23	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0117966_23	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0117966_23	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0117966_23	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0117966_24	PHROG	phrog_400	tail protein	tail
UHGV-0117966_24	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0117966_24	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0117966_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0117966_24	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-0117966_25	PHROG	phrog_579	NA	unknown function
UHGV-0117966_25	UniRef90	UniRef90_A0A412CHC2	NA	NA
UHGV-0117966_25	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0117966_25	Pfam	PF10844	NA	DUF2577
UHGV-0117966_25	Structural annotation	PF10844	NA	NA
UHGV-0117966_26	PHROG	phrog_120	baseplate protein	tail
UHGV-0117966_26	UniRef90	UniRef90_A0A412CHX1	NA	NA
UHGV-0117966_26	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0117966_26	Pfam	PF10934	NA	DUF2634
UHGV-0117966_26	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0117966_26	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0117966_27	PHROG	phrog_6	baseplate protein	tail
UHGV-0117966_27	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-0117966_27	eggNOG-mapper	568816.Acin_1959	Baseplate J-like protein	NA
UHGV-0117966_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0117966_27	COG	COG3299	NA	NA
UHGV-0117966_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0117966_28	PHROG	phrog_521	tail protein	tail
UHGV-0117966_28	UniRef90	UniRef90_UPI00195EBA52	NA	NA
UHGV-0117966_28	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0117966_28	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0117966_28	COG	COG3778	NA	NA
UHGV-0117966_28	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0117966_29	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0117966_29	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0117966_29	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0117966_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0117966_29	Structural annotation	PF12571	NA	NA
UHGV-0117966_32	KOfam	K14059	int; integrase	NA
UHGV-0117966_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0117966_32	UniRef90	UniRef90_A0A378NSV8	Tyrosine recombinase XerD	NA
UHGV-0117966_32	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0117966_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0117966_32	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0117966_32	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0117966_35	Structural annotation	PF13084	NA	NA
UHGV-0117966_36	PHROG	phrog_199	holin	lysis
UHGV-0117966_36	UniRef90	UniRef90_A0A1H8EGR7	Toxin secretion/phage lysis holin	NA
UHGV-0117966_36	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0117966_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0117966_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0117966_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0117966_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0117966_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0117966_37	PHROG	phrog_435	endolysin	lysis
UHGV-0117966_37	UniRef90	UniRef90_A0A1H8EGV1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0117966_37	eggNOG-mapper	1232428.CAVO010000002_gene2340	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0117966_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0117966_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0117966_37	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0117966_38	PHROG	phrog_18996	NA	unknown function
UHGV-0117966_38	UniRef90	UniRef90_UPI001C3B7CE9	Prevent-host-death protein	NA
UHGV-0117966_38	eggNOG-mapper	888060.HMPREF9081_1707	NA	NA
UHGV-0117966_40	eggNOG-mapper	568816.Acin_1213	NA	NA
UHGV-0117966_42	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0117966_42	PHROG	phrog_95	integrase	integration and excision
UHGV-0117966_42	UniRef90	UniRef90_A0A412CHP2	Recombinase family protein	NA
UHGV-0117966_42	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-0117966_42	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0117966_42	Pfam	PF07508	Recombinase	Recombinase
UHGV-0117966_42	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0117966_42	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0117966_42	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0117966_43	PHROG	phrog_3300	transposase	integration and excision
UHGV-0117966_43	UniRef90	UniRef90_UPI001959522E	Rpn family recombination-promoting nuclease/putative transposase	NA
UHGV-0117966_43	eggNOG-mapper	1273103.NM10_08169	PD-(D/E)XK nuclease family transposase	NA
UHGV-0117966_43	Pfam	PF12784	PD-(D/E)XK nuclease family transposase	PDDEXK_2
UHGV-0117966_43	NCBIFam	TIGR01784.1	Rpn family recombination-promoting nuclease/putative transposase	NA
UHGV-0117966_43	COG	COG5464	Recombination-promoting DNA endonuclease RpnC/YadD	NA
UHGV-0117966_44	eggNOG-mapper	1111454.HMPREF1250_0286	NA	NA
UHGV-0117966_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0117966_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0117966_45	UniRef90	UniRef90_A0A412CHG6	XRE family transcriptional regulator	NA
UHGV-0117966_45	eggNOG-mapper	411468.CLOSCI_00323	sequence-specific DNA binding	NA
UHGV-0117966_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0117966_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0117966_45	Structural annotation	PF12844, MF_02017, NF007257, COG1476	NA	NA