UHGV-0118013

Genome information

Genome length 58,992 bps

CDS count 106

Completeness 99.90% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118013
vOTU ID	vOTU-078493
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286465
BioSample	SAMEA4378234
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.86
Jumbo phage	No

Genome content
Genome length	58,992 bps
GC content	40.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	106
CDS density	86.94%
Average CDS length	487.67 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118013_2	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0118013_3	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0118013_4	PHROG	phrog_16490	NA	unknown function
UHGV-0118013_4	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0118013_5	PHROG	phrog_20016	NA	unknown function
UHGV-0118013_5	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0118013_5	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0118013_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0118013_6	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0118013_7	PHROG	phrog_1233	NA	unknown function
UHGV-0118013_7	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0118013_7	Structural annotation	PF13058	NA	NA
UHGV-0118013_10	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0118013_12	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0118013_15	PHROG	phrog_31631	NA	unknown function
UHGV-0118013_17	UniRef90	UniRef90_A0A2N5NVL9	Transcriptional regulator	NA
UHGV-0118013_17	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118013_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118013_18	Structural annotation	PF12993	NA	NA
UHGV-0118013_20	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0118013_21	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0118013_22	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0118013_22	UniRef90	UniRef90_UPI00189C4F21	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0118013_22	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0118013_22	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0118013_22	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0118013_22	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0118013_23	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0118013_28	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0118013_30	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0118013_30	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0118013_31	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0118013_31	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0118013_31	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0118013_31	COG	COG5410	NA	NA
UHGV-0118013_31	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0118013_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118013_32	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0118013_32	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0118013_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0118013_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0118013_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118013_33	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0118013_33	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118013_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118013_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118013_34	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0118013_35	PHROG	phrog_909	major head protein	head and packaging
UHGV-0118013_35	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0118013_35	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0118013_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-0118013_36	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0118013_36	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0118013_36	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0118013_36	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0118013_37	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0118013_37	Structural annotation	PF21169	NA	NA
UHGV-0118013_38	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0118013_39	PHROG	phrog_4105	NA	unknown function
UHGV-0118013_39	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0118013_40	PHROG	phrog_443	holin	lysis
UHGV-0118013_40	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0118013_40	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0118013_40	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0118013_40	Structural annotation	PF16945	NA	NA
UHGV-0118013_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0118013_43	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0118013_43	AcrCatalog	cluster_24841	NA	NA
UHGV-0118013_44	Structural annotation	PF05657	NA	NA
UHGV-0118013_45	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0118013_45	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0118013_48	PHROG	phrog_14030	NA	unknown function
UHGV-0118013_48	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0118013_48	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0118013_48	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0118013_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0118013_49	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0118013_49	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0118013_49	COG	COG1511	NA	NA
UHGV-0118013_49	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0118013_50	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0118013_50	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0118013_50	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0118013_51	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0118013_51	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0118013_51	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0118013_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0118013_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0118013_51	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0118013_52	PHROG	phrog_1194	NA	unknown function
UHGV-0118013_52	Pfam	PF20458	NA	DUF6711
UHGV-0118013_52	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0118013_53	PHROG	phrog_18190	NA	unknown function
UHGV-0118013_53	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0118013_53	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0118013_53	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0118013_53	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0118013_54	PHROG	phrog_17196	kinase	other
UHGV-0118013_54	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0118013_54	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0118013_56	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0118013_57	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0118013_57	Structural annotation	NF040910	NA	NA
UHGV-0118013_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118013_61	UniRef90	UniRef90_A0A1C5WLU7	Helix-turn-helix domain	NA
UHGV-0118013_61	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0118013_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118013_61	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0118013_61	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0118013_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118013_62	UniRef90	UniRef90_UPI001D081A91	helix-turn-helix transcriptional regulator	NA
UHGV-0118013_62	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118013_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118013_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118013_62	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0118013_67	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0118013_67	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0118013_67	UniRef90	UniRef90_A0A1T5K3B0	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0118013_67	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0118013_67	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0118013_67	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0118013_67	COG	COG3617	Prophage antirepressor	NA
UHGV-0118013_67	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0118013_70	PHROG	phrog_26861	NA	unknown function
UHGV-0118013_70	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0118013_70	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0118013_70	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118013_70	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118013_70	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0118013_71	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0118013_71	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118013_71	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0118013_71	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0118013_71	Pfam	PF13476	AAA domain	AAA_23
UHGV-0118013_71	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0118013_71	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0118013_75	PHROG	phrog_2164	NA	unknown function
UHGV-0118013_75	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0118013_78	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118013_78	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0118013_78	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0118013_78	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0118013_80	PHROG	phrog_25456	NA	unknown function
UHGV-0118013_82	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0118013_82	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0118013_82	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0118013_82	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0118013_82	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0118013_82	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0118013_82	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0118013_86	PHROG	phrog_19106	NA	unknown function
UHGV-0118013_86	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0118013_86	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0118013_86	Structural annotation	TIGR01453	NA	NA
UHGV-0118013_87	PHROG	phrog_11769	NA	unknown function
UHGV-0118013_87	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0118013_87	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0118013_87	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0118013_87	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0118013_87	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0118013_88	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0118013_88	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0118013_88	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0118013_88	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0118013_88	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0118013_88	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0118013_88	COG	COG0305	Replicative DNA helicase	NA
UHGV-0118013_88	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0118013_92	PHROG	phrog_22292	NA	unknown function
UHGV-0118013_94	PHROG	phrog_8684	NA	unknown function
UHGV-0118013_94	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-0118013_94	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-0118013_94	Pfam	PF09643	YopX protein	YopX
UHGV-0118013_94	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0118013_94	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0118013_95	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0118013_96	PHROG	phrog_20593	NA	unknown function
UHGV-0118013_98	PHROG	phrog_874	NA	unknown function
UHGV-0118013_98	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0118013_98	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0118013_98	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0118013_99	Structural annotation	PF11184	NA	NA
UHGV-0118013_101	PHROG	phrog_6724	NA	unknown function
UHGV-0118013_101	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0118013_104	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0118013_104	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0118013_104	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0118013_104	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0118013_104	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0118013_104	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0118013_104	COG	COG0863	DNA modification methylase	NA
UHGV-0118013_104	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0118013_105	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0118013_105	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0118013_105	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0118013_106	KOfam	K14059	int; integrase	NA
UHGV-0118013_106	PHROG	phrog_1	integrase	integration and excision
UHGV-0118013_106	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0118013_106	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0118013_106	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118013_106	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118013_106	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA