UHGV-0118075

Genome information

Genome length 59,471 bps

CDS count 95

Completeness 100.00% (complete)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118075
vOTU ID	vOTU-005224
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_297883
BioSample	SAMEA4431979
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.68
Jumbo phage	No

Genome content
Genome length	59,471 bps
GC content	49.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	83.49%
Average CDS length	525.47 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118075_1	PHROG	phrog_18725	NA	unknown function
UHGV-0118075_1	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0118075_1	COG	COG5492	NA	NA
UHGV-0118075_2	PHROG	phrog_13879	NA	unknown function
UHGV-0118075_2	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0118075_2	Pfam	PF19789	NA	DUF6273
UHGV-0118075_2	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0118075_3	PHROG	phrog_1194	NA	unknown function
UHGV-0118075_3	Pfam	PF20458	NA	DUF6711
UHGV-0118075_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0118075_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0118075_4	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0118075_4	Pfam	PF05746	DALR anticodon binding domain	DALR_1
UHGV-0118075_4	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0118075_5	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0118075_6	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0118075_6	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0118075_6	Pfam	PF16478	NA	DUF5055
UHGV-0118075_6	Structural annotation	PF16478	NA	NA
UHGV-0118075_7	PHROG	phrog_158	major tail protein	tail
UHGV-0118075_7	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0118075_7	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0118075_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0118075_8	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0118075_9	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0118075_10	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0118075_10	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0118075_11	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0118075_11	Structural annotation	TIGR01560	NA	NA
UHGV-0118075_12	PHROG	phrog_29	major head protein	head and packaging
UHGV-0118075_12	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0118075_12	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0118075_12	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0118075_12	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0118075_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118075_15	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0118075_15	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118075_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118075_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118075_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0118075_17	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0118075_17	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0118075_17	COG	COG5410	NA	NA
UHGV-0118075_17	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0118075_21	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0118075_21	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0118075_21	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0118075_21	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0118075_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118075_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118075_21	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0118075_22	UniRef90	UniRef90_A0A417DZ16	HTH cro/C1-type domain-containing protein	NA
UHGV-0118075_22	Pfam	PF13744	Helix-turn-helix domain	HTH_37
UHGV-0118075_22	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0118075_24	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0118075_25	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0118075_25	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0118075_25	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-0118075_25	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0118075_25	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0118075_25	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0118075_25	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0118075_27	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118075_27	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0118075_27	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0118075_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0118075_32	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0118075_32	UniRef90	UniRef90_B0NH38	Replication initiator protein A domain protein	NA
UHGV-0118075_32	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0118075_32	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0118075_32	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0118075_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0118075_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0118075_34	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0118075_34	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0118075_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0118075_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0118075_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0118075_35	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0118075_35	Pfam	PF19808	NA	DUF6291
UHGV-0118075_35	Structural annotation	PF19808	NA	NA
UHGV-0118075_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0118075_36	Structural annotation	PF14354	NA	NA
UHGV-0118075_38	Structural annotation	NF041588	NA	NA
UHGV-0118075_45	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0118075_45	eggNOG-mapper	1291050.JAGE01000001_gene2058	restriction endonuclease	NA
UHGV-0118075_45	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0118075_45	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0118075_46	Structural annotation	PF16677	NA	NA
UHGV-0118075_47	PHROG	phrog_7704	NA	unknown function
UHGV-0118075_47	UniRef90	UniRef90_UPI001495255A	NA	NA
UHGV-0118075_47	Pfam	PF04448	NA	DUF551
UHGV-0118075_50	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0118075_52	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0118075_55	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118075_55	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0118075_55	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0118075_55	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0118075_56	PHROG	phrog_924	NA	unknown function
UHGV-0118075_56	Pfam	PF04448	NA	DUF551
UHGV-0118075_56	Structural annotation	PF04448	NA	NA
UHGV-0118075_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118075_58	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118075_58	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118075_58	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0118075_58	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0118075_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118075_58	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118075_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118075_58	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0118075_59	PHROG	phrog_28936	NA	unknown function
UHGV-0118075_59	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0118075_59	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0118075_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118075_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118075_60	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0118075_60	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0118075_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118075_60	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118075_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118075_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118075_60	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0118075_61	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118075_61	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0118075_61	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0118075_61	Pfam	PF04404	ERF superfamily	ERF
UHGV-0118075_61	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0118075_63	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0118075_63	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-0118075_63	eggNOG-mapper	1123401.JHYQ01000003_gene2142	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0118075_63	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0118075_63	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0118075_64	Structural annotation	PF14143	NA	NA
UHGV-0118075_66	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0118075_66	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0118075_67	Structural annotation	TIGR03826	NA	NA
UHGV-0118075_68	Structural annotation	PF10922	NA	NA
UHGV-0118075_69	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0118075_69	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0118075_69	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0118075_69	Structural annotation	TIGR03070	NA	NA
UHGV-0118075_70	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118075_70	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0118075_70	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0118075_70	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118075_70	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0118075_70	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0118075_74	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0118075_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118075_74	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0118075_75	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118075_75	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0118075_75	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0118075_75	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0118075_75	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0118075_75	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0118075_75	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0118075_77	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0118075_77	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0118075_77	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0118075_77	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0118075_77	Pfam	PF13614	AAA domain	AAA_31
UHGV-0118075_77	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0118075_77	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0118075_79	Structural annotation	PF07878	NA	NA
UHGV-0118075_80	PHROG	phrog_3896	NA	unknown function
UHGV-0118075_80	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0118075_81	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0118075_81	UniRef90	UniRef90_UPI001DACB905	ORF6C domain-containing protein	NA
UHGV-0118075_81	eggNOG-mapper	1121115.AXVN01000056_gene2483	BRO family, N-terminal domain	NA
UHGV-0118075_81	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0118075_81	COG	COG3617	Prophage antirepressor	NA
UHGV-0118075_81	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0118075_82	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0118075_83	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0118075_84	PHROG	phrog_16490	NA	unknown function
UHGV-0118075_84	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0118075_87	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0118075_87	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118075_87	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0118075_89	PHROG	phrog_15303	NA	unknown function
UHGV-0118075_91	KOfam	K07273	acm; lysozyme	NA
UHGV-0118075_91	PHROG	phrog_291	endolysin	lysis
UHGV-0118075_91	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0118075_91	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0118075_91	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0118075_91	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0118075_91	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0118075_92	UniRef90	UniRef90_UPI001D07AB37	XkdX family protein	NA
UHGV-0118075_92	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0118075_92	Structural annotation	PF09693	NA	NA
UHGV-0118075_93	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0118075_93	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0118075_93	UniRef90	UniRef90_R8W3R1	Reverse transcriptase domain-containing protein	NA
UHGV-0118075_93	eggNOG-mapper	1203606.HMPREF1526_00259	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0118075_93	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0118075_93	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0118075_93	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0118075_94	PHROG	phrog_5302	tail protein	tail
UHGV-0118075_94	UniRef90	UniRef90_UPI001CBAF2B2	carboxypeptidase-like regulatory domain-containing protein	NA
UHGV-0118075_94	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0118075_94	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0118075_94	Structural annotation	PF12985	NA	NA
UHGV-0118075_95	UniRef90	UniRef90_UPI001D0EF571	Ig-like domain-containing protein	NA
UHGV-0118075_95	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0118075_95	COG	COG5492	NA	NA