UHGV-0118115

Genome information

Genome length 40,608 bps

CDS count 69

Completeness 91.13% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118115
vOTU ID	vOTU-065865
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284237
BioSample	SAMEA4378242
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.66
Jumbo phage	No

Genome content
Genome length	40,608 bps
GC content	37.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.62%
Average CDS length	548.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118115_1	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0118115_1	PHROG	phrog_670	endolysin	lysis
UHGV-0118115_1	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0118115_1	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0118115_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0118115_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0118115_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0118115_1	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0118115_2	PHROG	phrog_962	holin	lysis
UHGV-0118115_2	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0118115_2	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0118115_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0118115_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0118115_2	COG	COG5546	NA	NA
UHGV-0118115_4	PHROG	phrog_18444	NA	unknown function
UHGV-0118115_5	PHROG	phrog_6616	tail protein	tail
UHGV-0118115_5	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0118115_5	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0118115_5	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0118115_6	PHROG	phrog_1194	NA	unknown function
UHGV-0118115_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0118115_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0118115_7	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0118115_7	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0118115_7	COG	COG5412	Phage-related protein	NA
UHGV-0118115_8	PHROG	phrog_706	NA	unknown function
UHGV-0118115_8	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0118115_8	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0118115_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0118115_8	Structural annotation	PF06854	NA	NA
UHGV-0118115_9	PHROG	phrog_11299	NA	unknown function
UHGV-0118115_9	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0118115_9	Structural annotation	PF10666	NA	NA
UHGV-0118115_10	PHROG	phrog_3099	NA	unknown function
UHGV-0118115_10	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0118115_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0118115_11	PHROG	phrog_3266	tail completion	connector
UHGV-0118115_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0118115_11	Structural annotation	PF12691	NA	NA
UHGV-0118115_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0118115_12	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0118115_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0118115_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0118115_12	Structural annotation	PF11114	NA	NA
UHGV-0118115_13	PHROG	phrog_3366	NA	unknown function
UHGV-0118115_13	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0118115_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0118115_14	PHROG	phrog_1233	NA	unknown function
UHGV-0118115_14	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0118115_14	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0118115_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0118115_15	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0118115_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0118115_16	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0118115_16	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0118115_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0118115_17	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0118115_19	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0118115_20	PHROG	phrog_20016	NA	unknown function
UHGV-0118115_20	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0118115_20	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0118115_20	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0118115_21	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0118115_23	PHROG	phrog_21718	NA	unknown function
UHGV-0118115_23	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0118115_24	PHROG	phrog_419	NA	unknown function
UHGV-0118115_24	eggNOG-mapper	1211643.K4K2V0_9CAUD	NA	NA
UHGV-0118115_24	Structural annotation	PF14083	NA	NA
UHGV-0118115_25	PHROG	phrog_1048	NA	unknown function
UHGV-0118115_25	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0118115_26	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0118115_26	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0118115_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0118115_27	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0118115_27	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0118115_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0118115_27	COG	COG2369	NA	NA
UHGV-0118115_27	Structural annotation	PF06152	NA	NA
UHGV-0118115_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0118115_28	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0118115_28	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0118115_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0118115_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118115_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0118115_30	UniRef90	UniRef90_UPI00156DBE69	PBSX family phage terminase large subunit	NA
UHGV-0118115_30	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0118115_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0118115_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0118115_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0118115_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118115_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0118115_31	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0118115_31	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0118115_31	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0118115_31	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0118115_31	Structural annotation	PF16677	NA	NA
UHGV-0118115_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118115_34	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-0118115_34	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0118115_34	Pfam	PF00847	AP2 domain	AP2
UHGV-0118115_34	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0118115_36	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-0118115_36	UniRef90	UniRef90_A0A3E4LX24	XRE family transcriptional regulator	NA
UHGV-0118115_38	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0118115_38	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0118115_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118115_38	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0118115_43	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118115_43	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-0118115_43	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0118115_43	Pfam	PF00847	AP2 domain	AP2
UHGV-0118115_43	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0118115_47	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0118115_47	UniRef90	UniRef90_A0A173TWB1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0118115_47	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0118115_47	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0118115_47	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0118115_47	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0118115_48	Structural annotation	PF14844	NA	NA
UHGV-0118115_50	Structural annotation	PF14084	NA	NA
UHGV-0118115_51	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0118115_52	Structural annotation	PF11950	NA	NA
UHGV-0118115_55	PHROG	phrog_31463	NA	unknown function
UHGV-0118115_55	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0118115_56	eggNOG-mapper	1121871.AUAT01000002_gene1365	NA	NA
UHGV-0118115_58	PHROG	phrog_4433	NA	unknown function
UHGV-0118115_58	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0118115_58	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0118115_58	Structural annotation	NF007410	NA	NA
UHGV-0118115_59	KOfam	K07483	K07483; transposase	NA
UHGV-0118115_59	UniRef90	UniRef90_UPI001BA881F1	transposase	NA
UHGV-0118115_59	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0118115_59	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0118115_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0118115_60	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0118115_60	UniRef90	UniRef90_D4MWK9	Phage regulatory protein, rha family	NA
UHGV-0118115_60	eggNOG-mapper	1582156.A0A0A8WJ71_9CAUD	DNA binding	NA
UHGV-0118115_60	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0118115_60	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0118115_60	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0118115_61	PHROG	phrog_16304	NA	unknown function
UHGV-0118115_61	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0118115_61	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0118115_62	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0118115_62	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118115_62	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0118115_62	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-0118115_62	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0118115_62	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0118115_62	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0118115_63	PHROG	phrog_7566	NA	unknown function
UHGV-0118115_63	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0118115_63	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0118115_64	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0118115_64	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0118115_64	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0118115_64	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0118115_65	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118115_65	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0118115_65	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0118115_65	Pfam	PF04404	ERF superfamily	ERF
UHGV-0118115_65	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0118115_69	PHROG	phrog_36464	NA	unknown function
UHGV-0118115_69	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0118115_69	Structural annotation	PF09035	NA	NA