UHGV-0118348

Genome information

Genome length 23,605 bps

CDS count 32

Completeness 58.52% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118348
vOTU ID	vOTU-038047
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298321
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.69
Jumbo phage	No

Genome content
Genome length	23,605 bps
GC content	31.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.09%
Average CDS length	689.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118348_1	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0118348_1	PHROG	phrog_13289	tail protein	tail
UHGV-0118348_1	UniRef90	UniRef90_UPI0011CA3AC4	SH3 domain-containing protein	NA
UHGV-0118348_1	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-0118348_1	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0118348_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0118348_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0118348_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0118348_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0118348_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0118348_2	UniRef90	UniRef90_A0A1C5YVW7	Phage-related protein	NA
UHGV-0118348_2	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0118348_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0118348_3	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0118348_3	UniRef90	UniRef90_R5XFK4	Phage tail tape measure protein TP901 family core region	NA
UHGV-0118348_3	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0118348_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0118348_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0118348_3	COG	COG5283	Phage-related tail protein	NA
UHGV-0118348_4	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0118348_4	UniRef90	UniRef90_A0A1G9TYM9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0118348_4	eggNOG-mapper	748727.CLJU_c31220	phage tail tape measure protein	NA
UHGV-0118348_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0118348_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0118348_5	PHROG	phrog_6541	NA	unknown function
UHGV-0118348_5	eggNOG-mapper	1196322.A370_04057	NA	NA
UHGV-0118348_6	PHROG	phrog_6280	NA	unknown function
UHGV-0118348_6	UniRef90	UniRef90_UPI001C800AF1	esterase	NA
UHGV-0118348_6	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0118348_7	PHROG	phrog_6686	tail tube protein	tail
UHGV-0118348_7	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0118348_7	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0118348_8	PHROG	phrog_7585	NA	unknown function
UHGV-0118348_8	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0118348_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0118348_9	UniRef90	UniRef90_A0A2H4J736	Putative tail component protein	NA
UHGV-0118348_9	eggNOG-mapper	559189.B6SBT4_9CAUD	NA	NA
UHGV-0118348_9	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0118348_10	PHROG	phrog_8435	NA	unknown function
UHGV-0118348_10	eggNOG-mapper	536233.CLO_0543	NA	NA
UHGV-0118348_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0118348_11	PHROG	phrog_4020	NA	unknown function
UHGV-0118348_11	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0118348_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0118348_12	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0118348_12	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0118348_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0118348_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0118348_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0118348_13	UniRef90	UniRef90_A0A1C5YXG1	Phage minor structural protein GP20	NA
UHGV-0118348_13	eggNOG-mapper	1033740.CAEW01000026_gene530	Phage minor structural protein GP20	NA
UHGV-0118348_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0118348_13	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0118348_14	PHROG	phrog_774	NA	unknown function
UHGV-0118348_14	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0118348_15	KOfam	K20235	RAW; raw	NA
UHGV-0118348_15	UniRef90	UniRef90_UPI000F057B22	nucleoside 2-deoxyribosyltransferase domain-containing protein	NA
UHGV-0118348_15	eggNOG-mapper	1540257.JQMW01000009_gene3361	Nucleoside 2-deoxyribosyltransferase like	NA
UHGV-0118348_15	Pfam	PF15891	Nucleoside 2-deoxyribosyltransferase like	Nuc_deoxyri_tr2
UHGV-0118348_15	Structural annotation	PF15891, MF_00526, TIGR03646	NA	NA
UHGV-0118348_17	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0118348_17	UniRef90	UniRef90_A0A1C5YWY9	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0118348_17	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0118348_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118348_18	UniRef90	UniRef90_A0A1C5YX51	Phage portal protein, putative, A118 family	NA
UHGV-0118348_18	eggNOG-mapper	1443122.Z958_p0036	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118348_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118348_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0118348_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118348_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0118348_19	UniRef90	UniRef90_UPI001106CEDD	PBSX family phage terminase large subunit	NA
UHGV-0118348_19	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0118348_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0118348_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0118348_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0118348_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118348_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0118348_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0118348_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0118348_20	UniRef90	UniRef90_UPI001484FC7A	terminase small subunit	NA
UHGV-0118348_20	eggNOG-mapper	1294142.CINTURNW_1022	Terminase Small Subunit	NA
UHGV-0118348_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0118348_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0118348_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0118348_21	PHROG	phrog_9079	NA	unknown function
UHGV-0118348_21	eggNOG-mapper	1391646.AVSU01000053_gene947	NA	NA
UHGV-0118348_22	PHROG	phrog_1558	NA	unknown function
UHGV-0118348_22	UniRef90	UniRef90_A0A174GQI9	Sigma-70 region 4 type 2	NA
UHGV-0118348_22	eggNOG-mapper	632245.CLP_2622	NA	NA
UHGV-0118348_22	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0118348_24	PHROG	phrog_98	NA	unknown function
UHGV-0118348_24	UniRef90	UniRef90_W7CB61	YopX domain-containing protein	NA
UHGV-0118348_24	eggNOG-mapper	888059.HMPREF9071_2108	YopX protein	NA
UHGV-0118348_24	Pfam	PF09643	YopX protein	YopX
UHGV-0118348_24	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0118348_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0118348_26	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0118348_26	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0118348_26	UniRef90	UniRef90_UPI0014852BBC	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0118348_26	eggNOG-mapper	768710.DesyoDRAFT_2483	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0118348_26	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0118348_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0118348_26	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0118348_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0118348_26	Structural annotation	PF04542, PF13404, MF_00959, TIGR02835, COG1191	NA	NA
UHGV-0118348_28	PHROG	phrog_824	NA	unknown function
UHGV-0118348_28	UniRef90	UniRef90_UPI0018AC7469	VRR-NUC domain-containing protein	NA
UHGV-0118348_28	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0118348_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0118348_28	Structural annotation	PF08774	NA	NA
UHGV-0118348_30	Structural annotation	PF09889	NA	NA
UHGV-0118348_31	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118348_31	UniRef90	UniRef90_A0A1C5YZ22	HTH_Tnp_Tc3_1 domain-containing protein	NA
UHGV-0118348_31	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0118348_31	Pfam	PF11427	Tc3 transposase	HTH_Tnp_Tc3_1
UHGV-0118348_31	Structural annotation	PF02796, TIGR04381, COG2771	NA	NA
UHGV-0118348_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0118348_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0118348_32	UniRef90	UniRef90_UPI00110642E5	ATP-binding protein	NA
UHGV-0118348_32	eggNOG-mapper	350688.Clos_1054	PFAM IstB-like ATP binding protein	NA
UHGV-0118348_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0118348_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0118348_32	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA