UHGV-0118423

Genome information

Genome length 22,972 bps

CDS count 39

Completeness 51.92% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118423
vOTU ID	vOTU-040182
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308700
BioSample	SAMEA37061668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.91
Jumbo phage	No

Genome content
Genome length	22,972 bps
GC content	43.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	88.65%
Average CDS length	524.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118423_1	UniRef90	UniRef90_UPI001C0FB34A	phage scaffolding protein	NA
UHGV-0118423_1	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-0118423_1	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0118423_3	PHROG	phrog_30750	NA	unknown function
UHGV-0118423_4	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0118423_4	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-0118423_4	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0118423_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0118423_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0118423_4	COG	COG2369	NA	NA
UHGV-0118423_4	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0118423_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118423_5	UniRef90	UniRef90_UPI001C01A84E	phage portal protein	NA
UHGV-0118423_5	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118423_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118423_5	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0118423_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118423_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118423_6	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0118423_6	UniRef90	UniRef90_A0A6L6L9A4	PBSX family phage terminase large subunit	NA
UHGV-0118423_6	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0118423_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0118423_6	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0118423_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0118423_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118423_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0118423_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0118423_7	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0118423_7	UniRef90	UniRef90_UPI001C01B209	terminase small subunit	NA
UHGV-0118423_7	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0118423_7	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0118423_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0118423_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0118423_7	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0118423_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118423_8	UniRef90	UniRef90_UPI001C016A9D	RNA polymerase subunit sigma-70	NA
UHGV-0118423_8	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-0118423_8	Structural annotation	PF02996	NA	NA
UHGV-0118423_10	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0118423_11	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118423_11	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118423_11	UniRef90	UniRef90_A0A1Q9J771	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118423_11	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0118423_11	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0118423_11	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118423_11	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118423_11	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0118423_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0118423_12	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0118423_12	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0118423_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0118423_12	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0118423_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0118423_16	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0118423_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0118423_17	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0118423_22	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0118423_22	UniRef90	UniRef90_A0A3E5EKT4	NA	NA
UHGV-0118423_22	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0118423_22	Pfam	PF06048	NA	DUF927
UHGV-0118423_22	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0118423_22	COG	COG5519	NA	NA
UHGV-0118423_22	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0118423_23	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0118423_23	PHROG	phrog_11992	NA	unknown function
UHGV-0118423_23	UniRef90	UniRef90_C7GC31	CHC2 zinc finger domain protein	NA
UHGV-0118423_23	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0118423_23	PADLOC	drt-UG29	DRT	DRT
UHGV-0118423_23	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0118423_23	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0118423_23	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0118423_24	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0118423_24	UniRef90	UniRef90_A0A7X4ZBJ6	ERCC4 domain-containing protein	NA
UHGV-0118423_24	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0118423_24	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0118423_24	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0118423_25	PHROG	phrog_18107	NA	unknown function
UHGV-0118423_25	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0118423_25	Structural annotation	PF05037	NA	NA
UHGV-0118423_26	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118423_26	UniRef90	UniRef90_A0A391PHL2	ATP-binding protein	NA
UHGV-0118423_26	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0118423_26	Pfam	PF13479	AAA domain	AAA_24
UHGV-0118423_26	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0118423_28	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0118423_28	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0118423_28	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0118423_28	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0118423_28	Structural annotation	PF05565	NA	NA
UHGV-0118423_29	Structural annotation	PF21596, TIGR03081	NA	NA
UHGV-0118423_30	UniRef90	UniRef90_A0A414RMV5	Lectin-1	NA
UHGV-0118423_30	Structural annotation	COG3296	NA	NA
UHGV-0118423_32	PHROG	phrog_3306	NA	unknown function
UHGV-0118423_32	UniRef90	UniRef90_UPI001C031D75	NA	NA
UHGV-0118423_32	eggNOG-mapper	469617.FUAG_01932	NA	NA
UHGV-0118423_32	AcrCatalog	cluster_5078	NA	NA
UHGV-0118423_32	Pfam	PF19670	NA	DUF6173
UHGV-0118423_32	Structural annotation	PF19670	NA	NA
UHGV-0118423_35	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0118423_35	UniRef90	UniRef90_UPI001C031D8B	helix-turn-helix transcriptional regulator	NA
UHGV-0118423_35	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118423_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118423_35	Structural annotation	PF13560, NF041951, COG1476	NA	NA
UHGV-0118423_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0118423_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118423_36	UniRef90	UniRef90_UPI001C026098	helix-turn-helix transcriptional regulator	NA
UHGV-0118423_36	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0118423_36	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0118423_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118423_36	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0118423_36	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0118423_37	PHROG	phrog_20936	NA	unknown function
UHGV-0118423_37	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0118423_37	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0118423_37	Structural annotation	PF06114	NA	NA
UHGV-0118423_38	eggNOG-mapper	883156.HMPREF9282_00199	NA	NA
UHGV-0118423_39	PHROG	phrog_5059	NA	unknown function
UHGV-0118423_39	UniRef90	UniRef90_A0A7X5EGP0	NA	NA
UHGV-0118423_39	eggNOG-mapper	717606.PaecuDRAFT_2356	NA	NA
UHGV-0118423_39	Pfam	PF08861	NA	DUF1828
UHGV-0118423_39	Pfam	PF08862	NA	DUF1829