UHGV-0118445

Genome information

Genome length 41,999 bps

CDS count 51

Completeness 96.17% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118445
vOTU ID	vOTU-065500
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292741
BioSample	SAMEA4431903
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.24
Jumbo phage	No

Genome content
Genome length	41,999 bps
GC content	50.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	88.91%
Average CDS length	736.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118445_2	UniRef90	UniRef90_UPI000A0F4F65	helix-turn-helix transcriptional regulator	NA
UHGV-0118445_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0118445_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0118445_3	PHROG	phrog_5076	NA	unknown function
UHGV-0118445_3	eggNOG-mapper	859657.RPSI07_mp0365	NA	NA
UHGV-0118445_4	PHROG	phrog_6079	tail protein	tail
UHGV-0118445_4	eggNOG-mapper	743720.Psefu_1464	NA	NA
UHGV-0118445_5	PHROG	phrog_30112	NA	unknown function
UHGV-0118445_5	eggNOG-mapper	1027273.GZ77_04715	NA	NA
UHGV-0118445_6	PHROG	phrog_26277	NA	unknown function
UHGV-0118445_6	eggNOG-mapper	1137799.GZ78_10890	NA	NA
UHGV-0118445_8	PHROG	phrog_6128	NA	unknown function
UHGV-0118445_8	eggNOG-mapper	1137799.GZ78_10895	NA	NA
UHGV-0118445_9	PHROG	phrog_4408	NA	unknown function
UHGV-0118445_9	eggNOG-mapper	1031711.RSPO_c02488	NA	NA
UHGV-0118445_10	PHROG	phrog_16017	NA	unknown function
UHGV-0118445_10	UniRef90	UniRef90_A0A2N0WWU4	TMP_3 domain-containing protein	NA
UHGV-0118445_10	eggNOG-mapper	211586.SO_0680	Mu-like prophage protein	NA
UHGV-0118445_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0118445_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0118445_10	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0118445_11	Pfam	PF13511	NA	DUF4124
UHGV-0118445_12	PHROG	phrog_807	major tail protein with Ig-like domain	tail
UHGV-0118445_12	eggNOG-mapper	318161.Sden_3244	NA	NA
UHGV-0118445_14	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0118445_14	eggNOG-mapper	1283300.ATXB01000002_gene2522	Prophage minor tail protein Z (GPZ)	NA
UHGV-0118445_14	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0118445_16	PHROG	phrog_122	head decoration	head and packaging
UHGV-0118445_16	UniRef90	UniRef90_UPI001C25193E	NA	NA
UHGV-0118445_16	eggNOG-mapper	371731.Rsw2DRAFT_2657	NA	NA
UHGV-0118445_16	Pfam	PF09956	NA	DUF2190
UHGV-0118445_16	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0118445_16	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0118445_17	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118445_17	PHROG	phrog_133	head maturation protease	head and packaging
UHGV-0118445_17	UniRef90	UniRef90_A0A447LN44	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0118445_17	eggNOG-mapper	1115512.EH105704_01_01260	Clp protease	NA
UHGV-0118445_17	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118445_17	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0118445_17	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118445_17	Structural annotation	PF00574, PF05065, MF_00444, MF_04119, NF011089, TIGR01554, COG0740, COG4397	NA	NA
UHGV-0118445_18	PHROG	phrog_21	portal protein	head and packaging
UHGV-0118445_18	UniRef90	UniRef90_A0A0D7LVK0	Phage portal protein	NA
UHGV-0118445_18	eggNOG-mapper	1005994.GTGU_00168	portal protein	NA
UHGV-0118445_18	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0118445_18	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0118445_18	COG	COG5511	Phage capsid protein	NA
UHGV-0118445_18	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0118445_19	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0118445_19	UniRef90	UniRef90_A0A1Q6AXW4	NA	NA
UHGV-0118445_19	eggNOG-mapper	1115512.EH105704_01_01290	NA	NA
UHGV-0118445_19	Structural annotation	PF19645	NA	NA
UHGV-0118445_20	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0118445_20	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0118445_20	UniRef90	UniRef90_A0A1H1QBP1	Phage terminase, large subunit GpA	NA
UHGV-0118445_20	eggNOG-mapper	1116375.VEJY3_09765	Phage terminase large subunit (GpA)	NA
UHGV-0118445_20	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0118445_20	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0118445_20	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0118445_20	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0118445_20	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0118445_21	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0118445_21	PHROG	phrog_1790	terminase small subunit	head and packaging
UHGV-0118445_21	UniRef90	UniRef90_A0A1H1QSP1	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0118445_21	eggNOG-mapper	1116375.VEJY3_09770	DNA Packaging	NA
UHGV-0118445_21	Pfam	PF07471	Phage DNA packaging protein Nu1	Phage_Nu1
UHGV-0118445_21	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0118445_21	Structural annotation	PF07471, MF_01155, NF033499, COG4220	NA	NA
UHGV-0118445_23	PHROG	phrog_873	endolysin	head and packaging
UHGV-0118445_23	UniRef90	UniRef90_UPI00080850A6	structural protein P5	NA
UHGV-0118445_23	eggNOG-mapper	399739.Pmen_3951	NA	NA
UHGV-0118445_24	PHROG	phrog_6384	holin	lysis
UHGV-0118445_24	UniRef90	UniRef90_UPI0015BE8256	holin	NA
UHGV-0118445_24	eggNOG-mapper	520999.PROVALCAL_00621	NA	NA
UHGV-0118445_25	PHROG	phrog_34963	NA	unknown function
UHGV-0118445_25	eggNOG-mapper	55601.VANGNB10_cI1614c	NA	NA
UHGV-0118445_27	KOfam	K19797	gp1; T-even-induced deoxynucleotide kinase [EC:2.7.4.12]	NA
UHGV-0118445_27	PHROG	phrog_139	deoxynucleoside monophosphate kinase	other
UHGV-0118445_27	UniRef90	UniRef90_UPI001F45B183	deoxynucleotide monophosphate kinase	NA
UHGV-0118445_27	eggNOG-mapper	1123020.AUIE01000006_gene4067	dephospho-CoA kinase activity	NA
UHGV-0118445_27	Pfam	PF21448	Deoxynucleotide monophosphate kinase	DNMK
UHGV-0118445_27	COG	COG0237	Dephospho-CoA kinase	NA
UHGV-0118445_27	Structural annotation	PF21448, MF_01111, TIGR01223, COG4088	NA	NA
UHGV-0118445_29	PHROG	phrog_1745	DNA transfer protein	other
UHGV-0118445_29	UniRef90	UniRef90_A0A7D0KXQ7	Putative A1 protein	NA
UHGV-0118445_29	eggNOG-mapper	1278073.MYSTI_01906	NA	NA
UHGV-0118445_29	Structural annotation	MF_00325, NF006988, COG2129	NA	NA
UHGV-0118445_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118445_30	UniRef90	UniRef90_A0A8I1W7E4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0118445_30	eggNOG-mapper	701347.Entcl_1853	PFAM endodeoxyribonuclease RusA	NA
UHGV-0118445_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0118445_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0118445_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0118445_31	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118445_31	UniRef90	UniRef90_UPI001E4F3FDA	NA	NA
UHGV-0118445_31	eggNOG-mapper	29486.NJ56_17565	NA	NA
UHGV-0118445_31	Pfam	PF06147	NA	DUF968
UHGV-0118445_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118445_31	Structural annotation	PF06147	NA	NA
UHGV-0118445_33	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0118445_33	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0118445_33	UniRef90	UniRef90_A0A8I1W7Q8	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0118445_33	eggNOG-mapper	82996.sch_10630	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0118445_33	PADLOC	oMTase_00018	orphan methyltransferase	RM
UHGV-0118445_33	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0118445_33	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0118445_33	COG	COG0338	DNA-adenine methylase	NA
UHGV-0118445_33	Structural annotation	PF02086, MF_00786, TIGR00571, COG0338	NA	NA
UHGV-0118445_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0118445_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0118445_37	UniRef90	UniRef90_UPI000A109FF3	replicative DNA helicase	NA
UHGV-0118445_37	eggNOG-mapper	716541.ECL_01306	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0118445_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0118445_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0118445_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0118445_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0118445_38	PHROG	phrog_277	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0118445_38	UniRef90	UniRef90_R4YC54	Phage_rep_O domain-containing protein	NA
UHGV-0118445_38	eggNOG-mapper	630626.EBL_c21990	Bacteriophage replication protein O	NA
UHGV-0118445_38	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0118445_38	NCBIFam	TIGR01610.1	phage replication protein O, N-terminal domain	NA
UHGV-0118445_38	Structural annotation	PF04492, TIGR01610, COG3388	NA	NA
UHGV-0118445_42	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0118445_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0118445_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118445_44	PHROG	phrog_8618	NA	unknown function
UHGV-0118445_44	eggNOG-mapper	471881.PROPEN_01990	NA	NA
UHGV-0118445_44	Structural annotation	PF06442, MF_01194, TIGR02097, COG5475	NA	NA
UHGV-0118445_45	PHROG	phrog_4446	NA	unknown function
UHGV-0118445_45	eggNOG-mapper	520999.PROVALCAL_01910	NA	NA
UHGV-0118445_47	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-0118445_47	PHROG	phrog_724	exonuclease recombination-associated	DNA, RNA and nucleotide metabolism
UHGV-0118445_47	UniRef90	UniRef90_UPI00143ED997	recombination-associated protein RdgC	NA
UHGV-0118445_47	eggNOG-mapper	999141.GME_16632	Putative exonuclease, RdgC	NA
UHGV-0118445_47	Pfam	PF04381	Putative exonuclease, RdgC	RdgC
UHGV-0118445_47	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-0118445_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118445_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118445_48	UniRef90	UniRef90_A0A432FL98	Single-stranded DNA-binding protein	NA
UHGV-0118445_48	eggNOG-mapper	634176.NT05HA_2209	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0118445_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118445_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118445_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118445_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118445_48	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0118445_49	eggNOG-mapper	1166130.H650_07000	NA	NA
UHGV-0118445_50	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0118445_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0118445_50	UniRef90	UniRef90_UPI0012619E03	phage integrase SAM-like domain-containing protein	NA
UHGV-0118445_50	eggNOG-mapper	29486.NJ56_17745	Belongs to the 'phage' integrase family	NA
UHGV-0118445_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118445_50	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0118445_50	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA