UHGV-0118465

Genome information

Genome length 43,721 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118465
vOTU ID	vOTU-008874
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286529
BioSample	SAMEA4378309
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.44
Jumbo phage	No

Genome content
Genome length	43,721 bps
GC content	60.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	94.66%
Average CDS length	783.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118465_2	PHROG	phrog_22978	NA	unknown function
UHGV-0118465_2	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0118465_2	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0118465_2	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0118465_2	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0118465_2	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0118465_3	UniRef90	UniRef90_A0A396K636	NA	NA
UHGV-0118465_3	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-0118465_4	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0118465_4	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0118465_4	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0118465_6	Structural annotation	PF18707, NF041740, COG5501	NA	NA
UHGV-0118465_7	PHROG	phrog_1899	NA	unknown function
UHGV-0118465_7	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0118465_7	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0118465_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0118465_8	PHROG	phrog_670	endolysin	lysis
UHGV-0118465_8	UniRef90	UniRef90_A0A3D4D877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0118465_8	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0118465_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0118465_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0118465_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0118465_9	PHROG	phrog_13256	NA	unknown function
UHGV-0118465_9	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0118465_11	PHROG	phrog_9428	NA	unknown function
UHGV-0118465_11	UniRef90	UniRef90_A0A6I2RCP8	Serine/threonine protein kinase	NA
UHGV-0118465_11	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0118465_12	PHROG	phrog_27545	NA	unknown function
UHGV-0118465_12	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0118465_12	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0118465_12	Structural annotation	PF16170	NA	NA
UHGV-0118465_13	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0118465_13	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0118465_13	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0118465_13	Pfam	PF19789	NA	DUF6273
UHGV-0118465_13	Structural annotation	PF19789	NA	NA
UHGV-0118465_14	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0118465_14	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0118465_14	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0118465_14	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0118465_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0118465_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0118465_14	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0118465_15	PHROG	phrog_12105	NA	unknown function
UHGV-0118465_15	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0118465_16	PHROG	phrog_371	major head protein	head and packaging
UHGV-0118465_16	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0118465_16	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0118465_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118465_17	PHROG	phrog_24113	NA	unknown function
UHGV-0118465_17	eggNOG-mapper	1519439.JPJG01000060_gene1889	NA	NA
UHGV-0118465_17	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0118465_18	PHROG	phrog_35275	NA	unknown function
UHGV-0118465_18	eggNOG-mapper	1519439.JPJG01000060_gene1888	NA	NA
UHGV-0118465_19	PHROG	phrog_30605	NA	unknown function
UHGV-0118465_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0118465_20	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0118465_20	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0118465_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118465_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0118465_21	UniRef90	UniRef90_A0A3D4D7N6	PBSX family phage terminase large subunit	NA
UHGV-0118465_21	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-0118465_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0118465_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0118465_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118465_21	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0118465_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0118465_22	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-0118465_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0118465_22	Structural annotation	PF16677	NA	NA
UHGV-0118465_24	PHROG	phrog_3896	NA	unknown function
UHGV-0118465_24	UniRef90	UniRef90_E5RWT2	Srl	NA
UHGV-0118465_24	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0118465_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118465_25	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0118465_25	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0118465_26	eggNOG-mapper	1519439.JPJG01000060_gene1882	NA	NA
UHGV-0118465_28	PHROG	phrog_9467	NA	unknown function
UHGV-0118465_28	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-0118465_28	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0118465_28	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0118465_28	Pfam	PF14359	NA	DUF4406
UHGV-0118465_28	dbAPIS	APIS043	NA	NA
UHGV-0118465_28	Structural annotation	PF13876, PF14359, COG3613	NA	NA
UHGV-0118465_31	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0118465_35	Structural annotation	PF08271	NA	NA
UHGV-0118465_37	PHROG	phrog_27610	NA	unknown function
UHGV-0118465_38	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0118465_38	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0118465_38	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0118465_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0118465_38	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-0118465_39	PHROG	phrog_3136	NA	unknown function
UHGV-0118465_39	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0118465_39	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0118465_39	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0118465_39	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0118465_40	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0118465_40	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0118465_40	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0118465_42	Structural annotation	PF02559, MF_00667, COG0231	NA	NA
UHGV-0118465_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118465_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118465_43	UniRef90	UniRef90_UPI00051B7A2F	DNA cytosine methyltransferase	NA
UHGV-0118465_43	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0118465_43	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0118465_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118465_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118465_43	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0118465_45	Structural annotation	PF09228	NA	NA
UHGV-0118465_47	eggNOG-mapper	1519439.JPJG01000060_gene1868	NA	NA
UHGV-0118465_50	UniRef90	UniRef90_UPI00051C0A6D	helix-turn-helix domain-containing protein	NA
UHGV-0118465_50	eggNOG-mapper	1211817.CCAT010000007_gene1062	NA	NA
UHGV-0118465_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118465_50	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0118465_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0118465_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118465_51	UniRef90	UniRef90_A0A3D4D7M3	HTH cro/C1-type domain-containing protein	NA
UHGV-0118465_51	eggNOG-mapper	1120998.AUFC01000030_gene2204	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118465_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118465_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118465_51	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0118465_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0118465_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0118465_52	UniRef90	UniRef90_UPI00051C6F9B	recombinase family protein	NA
UHGV-0118465_52	eggNOG-mapper	1519439.JPJG01000060_gene1861	Resolvase, N terminal domain	NA
UHGV-0118465_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118465_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0118465_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0118465_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118465_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0118465_53	UniRef90	UniRef90_UPI00195937CF	recombinase zinc beta ribbon domain-containing protein	NA
UHGV-0118465_53	eggNOG-mapper	1519439.JPJG01000025_gene580	resolvase	NA
UHGV-0118465_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA