UHGV-0118496

Genome information

Genome length 33,072 bps

CDS count 50

Completeness 96.08% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118496
vOTU ID	vOTU-076763
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_281032
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.67
Jumbo phage	No

Genome content
Genome length	33,072 bps
GC content	39.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.01%
Average CDS length	598.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118496_1	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0118496_1	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0118496_1	UniRef90	UniRef90_UPI0014355D5D	RNA-directed DNA polymerase	NA
UHGV-0118496_1	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0118496_1	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0118496_1	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0118496_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0118496_1	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0118496_2	PHROG	phrog_17147	NA	unknown function
UHGV-0118496_2	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0118496_2	eggNOG-mapper	457412.RSAG_01112	NA	NA
UHGV-0118496_2	Structural annotation	PF10651	NA	NA
UHGV-0118496_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0118496_4	Structural annotation	PF10618	NA	NA
UHGV-0118496_5	PHROG	phrog_372	tail protein	tail
UHGV-0118496_5	UniRef90	UniRef90_UPI00103462F4	NA	NA
UHGV-0118496_5	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0118496_5	Pfam	PF05895	NA	DUF859
UHGV-0118496_5	COG	COG4675	Phage tail collar domain	NA
UHGV-0118496_5	Structural annotation	COG4675	NA	NA
UHGV-0118496_6	PHROG	phrog_372	tail protein	tail
UHGV-0118496_6	Pfam	PF05895	NA	DUF859
UHGV-0118496_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0118496_7	UniRef90	UniRef90_A0A890GYC9	Phage tail protein	NA
UHGV-0118496_7	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0118496_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0118496_7	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0118496_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0118496_7	COG	COG4926	Phage-related protein	NA
UHGV-0118496_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0118496_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0118496_8	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0118496_8	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0118496_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0118496_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0118496_9	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0118496_9	UniRef90	UniRef90_A0A1C6EH41	Phage-related protein	NA
UHGV-0118496_9	eggNOG-mapper	12390.Q77MU4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0118496_9	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0118496_10	PHROG	phrog_1633	NA	unknown function
UHGV-0118496_10	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0118496_10	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0118496_10	Structural annotation	PF17318	NA	NA
UHGV-0118496_11	PHROG	phrog_1526	NA	unknown function
UHGV-0118496_11	eggNOG-mapper	938278.CAJO01000051_gene781	NA	NA
UHGV-0118496_12	PHROG	phrog_117	major tail protein	tail
UHGV-0118496_12	UniRef90	UniRef90_A0A6L5X9Z3	Phage tail protein	NA
UHGV-0118496_12	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0118496_12	COG	COG5492	NA	NA
UHGV-0118496_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0118496_13	PHROG	phrog_123	tail terminator	connector
UHGV-0118496_13	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-0118496_13	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0118496_13	Structural annotation	PF06141	NA	NA
UHGV-0118496_14	PHROG	phrog_387	neck protein	connector
UHGV-0118496_14	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-0118496_14	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0118496_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-0118496_15	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0118496_15	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0118496_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0118496_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0118496_16	UniRef90	UniRef90_UPI000C83D02F	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0118496_16	eggNOG-mapper	706433.HMPREF9430_01264	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0118496_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-0118496_16	Structural annotation	PF09355	NA	NA
UHGV-0118496_18	PHROG	phrog_32396	NA	unknown function
UHGV-0118496_18	UniRef90	UniRef90_A0A7X2NQN8	Phage major capsid protein	NA
UHGV-0118496_18	eggNOG-mapper	706433.HMPREF9430_01265	Phage capsid family	NA
UHGV-0118496_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118496_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118496_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118496_19	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0118496_19	UniRef90	UniRef90_A0A890GYE3	NA	NA
UHGV-0118496_19	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0118496_19	Pfam	PF14265	NA	DUF4355
UHGV-0118496_19	Structural annotation	PF14265	NA	NA
UHGV-0118496_20	PHROG	phrog_17688	NA	unknown function
UHGV-0118496_20	UniRef90	UniRef90_E7MNZ6	Putative phage terminase, large subunit	NA
UHGV-0118496_20	eggNOG-mapper	706433.HMPREF9430_01267	phage terminase, large subunit	NA
UHGV-0118496_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118496_20	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0118496_23	PHROG	phrog_3675	NA	unknown function
UHGV-0118496_23	UniRef90	UniRef90_U2JT34	YjcQ protein	NA
UHGV-0118496_23	eggNOG-mapper	665950.HMPREF1025_02533	YjcQ protein	NA
UHGV-0118496_23	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0118496_23	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0118496_24	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0118496_24	eggNOG-mapper	1042156.CXIVA_01840	Phage Mu protein F like protein	NA
UHGV-0118496_24	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0118496_24	COG	COG2369	NA	NA
UHGV-0118496_25	PHROG	phrog_104	portal protein	head and packaging
UHGV-0118496_25	UniRef90	UniRef90_A0A890GW77	Phage portal protein	NA
UHGV-0118496_25	eggNOG-mapper	706433.HMPREF9430_01270	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118496_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0118496_26	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118496_26	UniRef90	UniRef90_E7MP00	HNH endonuclease domain protein	NA
UHGV-0118496_26	eggNOG-mapper	706433.HMPREF9430_01271	HNH endonuclease domain protein	NA
UHGV-0118496_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0118496_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118496_26	Structural annotation	PF01844	NA	NA
UHGV-0118496_27	eggNOG-mapper	1504823.CCMM01000008_gene725	NA	NA
UHGV-0118496_27	Structural annotation	PF09274, COG4710	NA	NA
UHGV-0118496_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118496_29	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0118496_32	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0118496_32	UniRef90	UniRef90_UPI001039D6AD	integrase	NA
UHGV-0118496_32	eggNOG-mapper	1002809.SSIL_1411	NA	NA
UHGV-0118496_35	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0118496_35	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0118496_35	UniRef90	UniRef90_UPI000404F782	AAA family ATPase	NA
UHGV-0118496_35	eggNOG-mapper	1123263.AUKY01000015_gene1593	Primase C terminal 2 (PriCT-2)	NA
UHGV-0118496_35	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0118496_35	Pfam	PF13481	AAA domain	AAA_25
UHGV-0118496_35	COG	COG3598	RecA-family ATPase	NA
UHGV-0118496_35	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0118496_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0118496_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118496_36	UniRef90	UniRef90_UPI000CF97872	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0118496_36	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0118496_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0118496_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0118496_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0118496_37	PHROG	phrog_2698	NA	unknown function
UHGV-0118496_37	UniRef90	UniRef90_UPI00148D30D4	NA	NA
UHGV-0118496_37	eggNOG-mapper	1232449.BAHV02000010_gene2698	NA	NA
UHGV-0118496_38	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118496_38	UniRef90	UniRef90_UPI0007C86507	AAA family ATPase	NA
UHGV-0118496_38	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0118496_38	Pfam	PF13479	AAA domain	AAA_24
UHGV-0118496_39	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0118496_39	UniRef90	UniRef90_UPI001C017BAC	siphovirus Gp157 family protein	NA
UHGV-0118496_39	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-0118496_39	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0118496_39	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0118496_44	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0118496_45	eggNOG-mapper	1235792.C808_05393	NA	NA
UHGV-0118496_47	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0118496_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0118496_47	UniRef90	UniRef90_U6F5M3	Prophage antirepressor	NA
UHGV-0118496_47	eggNOG-mapper	578234.B8R674_9CAUD	DNA binding	NA
UHGV-0118496_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0118496_47	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0118496_47	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0118496_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0118496_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118496_49	UniRef90	UniRef90_UPI000CF84712	helix-turn-helix domain-containing protein	NA
UHGV-0118496_49	eggNOG-mapper	1232449.BAHV02000002_gene211	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0118496_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118496_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0118496_50	KOfam	K14059	int; integrase	NA
UHGV-0118496_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0118496_50	UniRef90	UniRef90_UPI00041838CC	site-specific integrase	NA
UHGV-0118496_50	eggNOG-mapper	1123263.AUKY01000012_gene1957	Pfam:Integrase_AP2	NA
UHGV-0118496_50	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0118496_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118496_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118496_50	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA