UHGV-0118497

Genome information

Genome length 35,164 bps

CDS count 59

Completeness 95.64% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118497
vOTU ID	vOTU-076764
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_281031
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.23
Jumbo phage	No

Genome content
Genome length	35,164 bps
GC content	38.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.25%
Average CDS length	554.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118497_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0118497_1	PHROG	phrog_7	endolysin	lysis
UHGV-0118497_1	UniRef90	UniRef90_A0A843HJI5	Lysozyme	NA
UHGV-0118497_1	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0118497_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0118497_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0118497_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0118497_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0118497_1	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0118497_2	PHROG	phrog_199	holin	lysis
UHGV-0118497_2	UniRef90	UniRef90_UPI001C014087	phage holin family protein	NA
UHGV-0118497_2	eggNOG-mapper	411468.CLOSCI_00271	COG COG4824 Phage-related holin (Lysis protein)	NA
UHGV-0118497_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0118497_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0118497_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0118497_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0118497_3	PHROG	phrog_9994	NA	unknown function
UHGV-0118497_3	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0118497_3	Structural annotation	PF20747	NA	NA
UHGV-0118497_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0118497_4	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0118497_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0118497_4	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0118497_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0118497_5	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0118497_5	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0118497_5	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0118497_6	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0118497_6	UniRef90	UniRef90_UPI000DD03AB1	phage tail tape measure protein	NA
UHGV-0118497_6	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0118497_6	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0118497_6	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0118497_7	PHROG	phrog_706	NA	unknown function
UHGV-0118497_7	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0118497_7	eggNOG-mapper	1539298.JO41_08145	Bacteriophage Gp15 protein	NA
UHGV-0118497_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0118497_7	Structural annotation	PF06854	NA	NA
UHGV-0118497_8	Structural annotation	PF20378	NA	NA
UHGV-0118497_9	PHROG	phrog_3099	NA	unknown function
UHGV-0118497_9	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0118497_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0118497_10	PHROG	phrog_3266	tail completion	connector
UHGV-0118497_10	Structural annotation	PF12691	NA	NA
UHGV-0118497_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0118497_11	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0118497_11	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0118497_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0118497_11	Structural annotation	PF11114	NA	NA
UHGV-0118497_12	PHROG	phrog_3366	NA	unknown function
UHGV-0118497_12	Pfam	PF20536	NA	DUF6751
UHGV-0118497_12	Structural annotation	PF20536	NA	NA
UHGV-0118497_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0118497_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0118497_15	eggNOG-mapper	1235794.C811_01371	NA	NA
UHGV-0118497_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0118497_16	UniRef90	UniRef90_A0A173RNU4	Phage minor structural protein GP20	NA
UHGV-0118497_16	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0118497_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0118497_16	Structural annotation	PF06810	NA	NA
UHGV-0118497_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0118497_18	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0118497_18	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0118497_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0118497_18	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0118497_18	COG	COG2369	NA	NA
UHGV-0118497_18	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0118497_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0118497_19	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0118497_19	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0118497_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0118497_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118497_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0118497_20	UniRef90	UniRef90_UPI00164C1039	phage terminase large subunit	NA
UHGV-0118497_20	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0118497_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0118497_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118497_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0118497_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0118497_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0118497_21	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0118497_21	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0118497_21	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0118497_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0118497_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0118497_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0118497_25	PHROG	phrog_874	NA	unknown function
UHGV-0118497_25	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0118497_25	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0118497_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0118497_27	PHROG	phrog_20593	NA	unknown function
UHGV-0118497_28	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0118497_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0118497_28	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0118497_28	Structural annotation	PF14354	NA	NA
UHGV-0118497_29	UniRef90	UniRef90_UPI001C039694	Lar family restriction alleviation protein	NA
UHGV-0118497_29	eggNOG-mapper	1235800.C819_02246	NA	NA
UHGV-0118497_29	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0118497_30	PHROG	phrog_8684	NA	unknown function
UHGV-0118497_30	UniRef90	UniRef90_A0A3R6DZN9	YopX domain-containing protein	NA
UHGV-0118497_30	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0118497_30	Pfam	PF09643	YopX protein	YopX
UHGV-0118497_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0118497_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0118497_31	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0118497_31	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0118497_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118497_34	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0118497_34	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118497_34	eggNOG-mapper	411490.ANACAC_02374	NA	NA
UHGV-0118497_34	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0118497_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118497_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118497_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118497_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118497_35	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118497_35	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0118497_35	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0118497_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118497_35	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118497_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118497_35	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0118497_36	KOfam	K24451	zim; modification methylase	NA
UHGV-0118497_36	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0118497_36	UniRef90	UniRef90_A0A3R6Q0Y1	Methyltransferase	NA
UHGV-0118497_36	eggNOG-mapper	411473.RUMCAL_00273	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0118497_36	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0118497_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0118497_36	COG	COG0863	DNA modification methylase	NA
UHGV-0118497_36	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0118497_37	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0118497_37	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0118497_37	UniRef90	UniRef90_A0A3R6MX70	Helicase	NA
UHGV-0118497_37	eggNOG-mapper	394503.Ccel_3060	SNF2 family N-terminal domain	NA
UHGV-0118497_37	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0118497_37	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0118497_37	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0118497_37	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0118497_41	PHROG	phrog_15768	NA	unknown function
UHGV-0118497_41	UniRef90	UniRef90_R0D5K9	NA	NA
UHGV-0118497_41	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0118497_41	AcrCatalog	cluster_38323	NA	NA
UHGV-0118497_41	Pfam	PF19808	NA	DUF6291
UHGV-0118497_41	Structural annotation	PF19808	NA	NA
UHGV-0118497_42	UniRef90	UniRef90_A0A357NGS2	HTH_11 domain-containing protein	NA
UHGV-0118497_42	Structural annotation	PF21715, TIGR00122, COG1654	NA	NA
UHGV-0118497_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0118497_43	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118497_43	UniRef90	UniRef90_A0A3R5X017	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0118497_43	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0118497_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0118497_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0118497_44	PHROG	phrog_7566	NA	unknown function
UHGV-0118497_44	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0118497_44	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0118497_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0118497_45	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0118497_45	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0118497_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0118497_46	PHROG	phrog_14970	NA	unknown function
UHGV-0118497_46	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0118497_46	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0118497_46	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0118497_46	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0118497_50	PHROG	phrog_3292	NA	unknown function
UHGV-0118497_50	UniRef90	UniRef90_UPI0011848628	KTSC domain-containing protein	NA
UHGV-0118497_50	eggNOG-mapper	477974.Daud_0504	Belongs to the class-II aminoacyl-tRNA synthetase family	NA
UHGV-0118497_50	Pfam	PF13619	KTSC domain	KTSC
UHGV-0118497_50	COG	COG1190	Lysyl-tRNA synthetase (class II)	NA
UHGV-0118497_50	Structural annotation	PF13619	NA	NA
UHGV-0118497_51	PHROG	phrog_5765	NA	unknown function
UHGV-0118497_51	UniRef90	UniRef90_UPI00115D67B4	BC1881 family protein	NA
UHGV-0118497_51	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0118497_51	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0118497_55	UniRef90	UniRef90_A0A6N3H7Q7	Helix-turn-helix domain protein	NA
UHGV-0118497_55	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0118497_55	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0118497_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0118497_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118497_56	UniRef90	UniRef90_A0A6N3H5I3	HTH-type transcriptional regulator ImmR	NA
UHGV-0118497_56	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-0118497_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118497_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118497_57	PHROG	phrog_87	metallo-protease	other
UHGV-0118497_57	UniRef90	UniRef90_A0A3R6AQ03	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0118497_57	eggNOG-mapper	1235790.C805_00591	Zn peptidase	NA
UHGV-0118497_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0118497_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0118497_57	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0118497_58	UniRef90	UniRef90_A0A6J6I5H7	Unannotated protein	NA
UHGV-0118497_58	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-0118497_59	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0118497_59	UniRef90	UniRef90_A0A1E3AYC4	Abi-like protein	NA
UHGV-0118497_59	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-0118497_59	PADLOC	AbiD	AbiD	Abi
UHGV-0118497_59	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0118497_59	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0118497_59	Structural annotation	PF07751, COG4823	NA	NA