UHGV-0118530

Genome information

Genome length 45,434 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9561

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118530
vOTU ID	vOTU-066367
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284438
BioSample	SAMEA4378252
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9561
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.44
Jumbo phage	No

Genome content
Genome length	45,434 bps
GC content	34.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.02%
Average CDS length	744.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118530_1	KOfam	K14059	int; integrase	NA
UHGV-0118530_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0118530_1	UniRef90	UniRef90_UPI0019596A8B	site-specific integrase	NA
UHGV-0118530_1	eggNOG-mapper	1122217.KB899576_gene1907	Belongs to the 'phage' integrase family	NA
UHGV-0118530_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0118530_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118530_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118530_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0118530_3	eggNOG-mapper	1304284.L21TH_2623	NA	NA
UHGV-0118530_4	eggNOG-mapper	1122216.AUHW01000017_gene1195	NA	NA
UHGV-0118530_5	PHROG	phrog_87	metallo-protease	other
UHGV-0118530_5	UniRef90	UniRef90_A0A412CGX6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0118530_5	eggNOG-mapper	574375.BAGA_00350	IrrE N-terminal-like domain	NA
UHGV-0118530_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0118530_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0118530_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0118530_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0118530_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118530_6	UniRef90	UniRef90_A0A412CGP9	XRE family transcriptional regulator	NA
UHGV-0118530_6	eggNOG-mapper	1295642.H839_16148	transcriptional	NA
UHGV-0118530_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0118530_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118530_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118530_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0118530_7	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0118530_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0118530_7	UniRef90	UniRef90_A0A412CGD1	XRE family transcriptional regulator	NA
UHGV-0118530_7	eggNOG-mapper	1295642.H839_16148	transcriptional	NA
UHGV-0118530_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0118530_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118530_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118530_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0118530_10	UniRef90	UniRef90_H3K595	Excisionase family DNA binding domain-containing protein	NA
UHGV-0118530_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118530_13	UniRef90	UniRef90_UPI00195DF457	NA	NA
UHGV-0118530_13	eggNOG-mapper	445335.CBN_3007	NA	NA
UHGV-0118530_13	Pfam	PF10926	NA	DUF2800
UHGV-0118530_13	COG	COG2887	RecB family exonuclease	NA
UHGV-0118530_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0118530_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118530_14	UniRef90	UniRef90_UPI001C39CB6B	NA	NA
UHGV-0118530_14	eggNOG-mapper	1540257.JQMW01000004_gene440	NA	NA
UHGV-0118530_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0118530_14	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0118530_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0118530_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0118530_15	UniRef90	UniRef90_H3K5A0	POLAc domain-containing protein	NA
UHGV-0118530_15	eggNOG-mapper	748727.CLJU_c36550	DNA polymerase	NA
UHGV-0118530_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0118530_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0118530_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0118530_17	PHROG	phrog_16315	NA	unknown function
UHGV-0118530_17	UniRef90	UniRef90_UPI001955FB87	PcfJ domain-containing protein	NA
UHGV-0118530_17	eggNOG-mapper	1262914.BN533_00797	PcfJ-like protein	NA
UHGV-0118530_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0118530_17	Structural annotation	PF14284	NA	NA
UHGV-0118530_18	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0118530_18	UniRef90	UniRef90_UPI001C3B820C	Virulence-associated E family protein	NA
UHGV-0118530_18	eggNOG-mapper	332101.JIBU02000048_gene3721	virulence-associated E family protein	NA
UHGV-0118530_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0118530_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0118530_18	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0118530_19	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118530_19	UniRef90	UniRef90_H3K5A4	VRR-NUC domain-containing protein	NA
UHGV-0118530_19	eggNOG-mapper	1408437.JNJN01000045_gene600	VRR_NUC	NA
UHGV-0118530_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0118530_19	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0118530_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0118530_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0118530_20	UniRef90	UniRef90_H3K5A5	Helicase ATP-binding domain-containing protein	NA
UHGV-0118530_20	eggNOG-mapper	1408303.JNJJ01000049_gene2729	SNF2 family N-terminal domain	NA
UHGV-0118530_20	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0118530_20	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0118530_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0118530_20	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0118530_24	KOfam	K07580	K07580; Zn-ribbon RNA-binding protein	NA
UHGV-0118530_25	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0118530_25	UniRef90	UniRef90_UPI00195AD3A9	phage terminase small subunit	NA
UHGV-0118530_25	eggNOG-mapper	1232428.CAVO010000021_gene808	DNA packaging	NA
UHGV-0118530_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0118530_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0118530_25	COG	COG5484	NA	NA
UHGV-0118530_25	Structural annotation	PF02796, NF040601, COG5484	NA	NA
UHGV-0118530_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118530_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0118530_26	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0118530_26	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0118530_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0118530_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0118530_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0118530_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118530_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0118530_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118530_27	UniRef90	UniRef90_UPI001CD66E01	phage portal protein	NA
UHGV-0118530_27	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118530_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118530_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118530_28	PHROG	phrog_29127	NA	unknown function
UHGV-0118530_28	eggNOG-mapper	568816.Acin_1384	NA	NA
UHGV-0118530_29	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0118530_29	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0118530_29	UniRef90	UniRef90_UPI00195CAEE8	collagen-like protein	NA
UHGV-0118530_29	eggNOG-mapper	1282664.H354_09826	Hep Hag repeat protein	NA
UHGV-0118530_29	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0118530_29	COG	COG5295	Autotransporter adhesin	NA
UHGV-0118530_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0118530_30	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0118530_30	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0118530_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0118530_30	Structural annotation	PF06810	NA	NA
UHGV-0118530_31	PHROG	phrog_247	major head protein	head and packaging
UHGV-0118530_31	UniRef90	UniRef90_UPI001CD50515	major capsid protein	NA
UHGV-0118530_31	eggNOG-mapper	1273103.NM10_01069	NA	NA
UHGV-0118530_31	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0118530_31	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0118530_32	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0118530_32	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0118530_32	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0118530_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0118530_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0118530_32	COG	COG2369	NA	NA
UHGV-0118530_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0118530_34	PHROG	phrog_5479	NA	unknown function
UHGV-0118530_35	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0118530_35	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0118530_36	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0118530_36	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0118530_36	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0118530_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0118530_37	UniRef90	UniRef90_UPI001D002B4E	HK97 gp10 family phage protein	NA
UHGV-0118530_37	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0118530_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0118530_37	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0118530_38	PHROG	phrog_525	NA	unknown function
UHGV-0118530_38	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0118530_38	Pfam	PF20765	NA	DUF6838
UHGV-0118530_38	Structural annotation	PF20765	NA	NA
UHGV-0118530_39	PHROG	phrog_1480	tail sheath	tail
UHGV-0118530_39	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0118530_39	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0118530_39	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0118530_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0118530_39	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0118530_40	PHROG	phrog_365	tail protein	tail
UHGV-0118530_40	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0118530_40	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0118530_40	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0118530_40	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0118530_41	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0118530_41	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0118530_41	eggNOG-mapper	568816.Acin_1376	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0118530_41	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0118530_41	Structural annotation	PF08890	NA	NA
UHGV-0118530_42	PHROG	phrog_16692	NA	unknown function
UHGV-0118530_42	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0118530_42	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0118530_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0118530_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0118530_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0118530_42	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0118530_43	PHROG	phrog_380	endolysin	lysis
UHGV-0118530_43	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0118530_43	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0118530_43	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0118530_43	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0118530_44	PHROG	phrog_400	tail protein	tail
UHGV-0118530_44	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0118530_44	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0118530_44	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0118530_44	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0118530_45	PHROG	phrog_579	NA	unknown function
UHGV-0118530_45	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0118530_45	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0118530_45	Pfam	PF10844	NA	DUF2577
UHGV-0118530_45	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0118530_46	PHROG	phrog_120	baseplate protein	tail
UHGV-0118530_46	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0118530_46	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0118530_46	Pfam	PF10934	NA	DUF2634
UHGV-0118530_46	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0118530_47	PHROG	phrog_6	baseplate protein	tail
UHGV-0118530_47	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0118530_47	eggNOG-mapper	1273103.NM10_00999	Baseplate J-like protein	NA
UHGV-0118530_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0118530_47	COG	COG3299	NA	NA
UHGV-0118530_47	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0118530_48	PHROG	phrog_521	tail protein	tail
UHGV-0118530_48	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0118530_48	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-0118530_48	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0118530_48	COG	COG3778	NA	NA
UHGV-0118530_48	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0118530_49	eggNOG-mapper	1122918.KB907250_gene3597	Phage tail-collar fibre protein	NA
UHGV-0118530_49	Structural annotation	PF12571	NA	NA
UHGV-0118530_50	PHROG	phrog_18608	NA	unknown function
UHGV-0118530_50	eggNOG-mapper	1536772.R70723_29220	ATPase involved in DNA repair	NA
UHGV-0118530_50	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0118530_50	Structural annotation	PF18463, NF012201	NA	NA
UHGV-0118530_51	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-0118530_53	KOfam	K14059	int; integrase	NA
UHGV-0118530_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0118530_53	UniRef90	UniRef90_H3K6Q3	Core-binding (CB) domain-containing protein (Fragment)	NA
UHGV-0118530_53	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0118530_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118530_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118530_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0118530_54	PHROG	phrog_199	holin	lysis
UHGV-0118530_54	UniRef90	UniRef90_A0A378NSW3	Phage-related holin (Lysis protein)	NA
UHGV-0118530_54	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0118530_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0118530_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0118530_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0118530_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0118530_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0118530_55	PHROG	phrog_822	amidase	lysis
UHGV-0118530_55	UniRef90	UniRef90_UPI0018C4EA8D	peptidoglycan recognition protein family protein	NA
UHGV-0118530_55	eggNOG-mapper	864563.HMPREF9166_0546	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0118530_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0118530_55	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0118530_55	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0118530_57	UniRef90	UniRef90_A0A378NSR8	Inner membrane protein yeeR	NA
UHGV-0118530_57	eggNOG-mapper	1262915.BN574_01067	repeat protein	NA
UHGV-0118530_57	COG	COG2020	Protein-S-isoprenylcysteine O-methyltransferase Ste14	NA