UHGV-0118532

Genome information

Genome length 46,845 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118532
vOTU ID	vOTU-010271
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284441
BioSample	SAMEA4378252
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.02
Jumbo phage	No

Genome content
Genome length	46,845 bps
GC content	51.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.12%
Average CDS length	656.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118532_1	eggNOG-mapper	1280668.ATVT01000004_gene2256	NA	NA
UHGV-0118532_2	KOfam	K03701	uvrA; excinuclease ABC subunit A	NA
UHGV-0118532_2	PHROG	phrog_21263	NA	unknown function
UHGV-0118532_2	UniRef90	UniRef90_R5AXJ1	Excinuclease ATPase subunit	NA
UHGV-0118532_2	eggNOG-mapper	718252.FP2_29080	NA	NA
UHGV-0118532_2	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0118532_2	Pfam	PF17755	UvrA DNA-binding domain	UvrA_DNA-bind
UHGV-0118532_2	COG	COG0178	Excinuclease UvrABC ATPase subunit	NA
UHGV-0118532_2	Structural annotation	PF17755, PF13304, MF_00205, NF001503, COG0178	NA	NA
UHGV-0118532_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0118532_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0118532_3	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0118532_3	eggNOG-mapper	663278.Ethha_0939	NA	NA
UHGV-0118532_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118532_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0118532_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0118532_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118532_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0118532_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0118532_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0118532_4	UniRef90	UniRef90_UPI00164CF79B	S24 family peptidase	NA
UHGV-0118532_4	eggNOG-mapper	500633.CLOHIR_00339	Peptidase S24-like	NA
UHGV-0118532_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0118532_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0118532_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0118532_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0118532_8	UniRef90	UniRef90_UPI0018982E6D	Holliday junction resolvase RecU	NA
UHGV-0118532_8	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0118532_8	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0118532_9	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0118532_9	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0118532_9	UniRef90	UniRef90_UPI00164EB154	DEAD/DEAH box helicase family protein	NA
UHGV-0118532_9	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0118532_9	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0118532_9	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0118532_9	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0118532_9	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0118532_9	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0118532_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118532_10	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118532_10	UniRef90	UniRef90_UPI001897DAE5	DNA cytosine methyltransferase	NA
UHGV-0118532_10	eggNOG-mapper	573061.Clocel_3986	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0118532_10	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0118532_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118532_10	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118532_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118532_10	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0118532_11	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0118532_11	UniRef90	UniRef90_UPI00164EA4F0	DNA polymerase elongation subunit (family B)	NA
UHGV-0118532_11	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0118532_11	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0118532_11	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0118532_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118532_12	UniRef90	UniRef90_UPI00164E6A42	ERF family protein	NA
UHGV-0118532_12	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0118532_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0118532_12	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0118532_12	Structural annotation	PF04404	NA	NA
UHGV-0118532_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118532_13	UniRef90	UniRef90_UPI00164ECEF5	YqaJ viral recombinase family protein	NA
UHGV-0118532_13	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0118532_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0118532_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0118532_13	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0118532_16	Structural annotation	PF05037, NF005674	NA	NA
UHGV-0118532_17	PHROG	phrog_1485	NA	unknown function
UHGV-0118532_17	UniRef90	UniRef90_UPI00164CE11C	nucleotide modification associated domain-containing protein	NA
UHGV-0118532_17	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0118532_17	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0118532_18	Structural annotation	PF08410, COG5515	NA	NA
UHGV-0118532_19	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0118532_19	UniRef90	UniRef90_UPI001899D94E	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0118532_19	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0118532_19	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0118532_19	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0118532_19	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0118532_20	PHROG	phrog_3154	NA	unknown function
UHGV-0118532_21	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0118532_21	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0118532_21	UniRef90	UniRef90_A0A1C5MUY3	Predicted HD-superfamily hydrolase	NA
UHGV-0118532_21	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0118532_21	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0118532_21	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0118532_22	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0118532_22	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0118532_22	UniRef90	UniRef90_UPI001A9AFBB0	FAD-dependent thymidylate synthase	NA
UHGV-0118532_22	eggNOG-mapper	1235797.C816_01399	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0118532_22	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0118532_22	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0118532_22	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0118532_22	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0118532_25	PHROG	phrog_30550	NA	unknown function
UHGV-0118532_25	UniRef90	UniRef90_A0A2N2CRJ1	Hydrolase_2 domain-containing protein	NA
UHGV-0118532_25	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0118532_25	Structural annotation	TIGR02869	NA	NA
UHGV-0118532_26	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0118532_26	UniRef90	UniRef90_UPI00164DE9BA	primase C-terminal domain-containing protein	NA
UHGV-0118532_26	eggNOG-mapper	1121866.AUGK01000003_gene1409	Phage plasmid primase, P4 family domain protein	NA
UHGV-0118532_26	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0118532_26	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-0118532_26	Structural annotation	PF08708, PF09250, COG4983	NA	NA
UHGV-0118532_28	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0118532_28	UniRef90	UniRef90_UPI00164E4416	phage/plasmid primase, P4 family	NA
UHGV-0118532_28	eggNOG-mapper	649747.HMPREF0083_00553	Phage plasmid primase, P4 family	NA
UHGV-0118532_28	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0118532_28	Pfam	PF19263	NA	DUF5906
UHGV-0118532_28	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0118532_28	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0118532_28	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0118532_28	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF005477, COG3378	NA	NA
UHGV-0118532_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0118532_29	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0118532_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0118532_29	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0118532_29	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0118532_29	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0118532_31	PHROG	phrog_22389	NA	unknown function
UHGV-0118532_31	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0118532_37	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0118532_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118532_37	eggNOG-mapper	138119.DSY3273	sequence-specific DNA binding	NA
UHGV-0118532_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118532_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118532_37	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0118532_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0118532_39	UniRef90	UniRef90_UPI001C012D23	DNA-packaging protein	NA
UHGV-0118532_39	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0118532_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0118532_39	Structural annotation	PF16677	NA	NA
UHGV-0118532_40	PHROG	phrog_4264	NA	unknown function
UHGV-0118532_40	eggNOG-mapper	442493.A8E2H1_BPPHE	NA	NA
UHGV-0118532_42	PHROG	phrog_17101	NA	unknown function
UHGV-0118532_45	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0118532_45	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0118532_45	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0118532_46	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0118532_46	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0118532_46	UniRef90	UniRef90_H1CEQ0	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0118532_46	eggNOG-mapper	1345695.CLSA_c29990	Resolvase, N terminal domain	NA
UHGV-0118532_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118532_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118532_46	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0118532_47	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0118532_47	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0118532_47	Structural annotation	PF12869, MF_01959, NF009635, COG0361	NA	NA
UHGV-0118532_48	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0118532_48	UniRef90	UniRef90_UPI00164E3A67	phage terminase large subunit	NA
UHGV-0118532_48	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0118532_48	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0118532_48	COG	COG5410	NA	NA
UHGV-0118532_48	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0118532_49	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118532_49	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0118532_49	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118532_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118532_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118532_51	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0118532_52	PHROG	phrog_247	major head protein	head and packaging
UHGV-0118532_52	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0118532_52	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0118532_52	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0118532_54	UniRef90	UniRef90_UPI00164E20D5	phage head-tail connector protein	NA
UHGV-0118532_54	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0118532_54	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0118532_54	Structural annotation	TIGR01560	NA	NA
UHGV-0118532_55	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0118532_56	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0118532_57	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0118532_58	PHROG	phrog_158	major tail protein	tail
UHGV-0118532_58	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0118532_58	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0118532_58	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0118532_58	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0118532_59	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0118532_59	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0118532_59	Pfam	PF16478	NA	DUF5055
UHGV-0118532_59	Structural annotation	PF16478	NA	NA
UHGV-0118532_60	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0118532_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0118532_61	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0118532_61	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0118532_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0118532_62	PHROG	phrog_1194	NA	unknown function
UHGV-0118532_62	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0118532_62	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0118532_62	Pfam	PF20458	NA	DUF6711
UHGV-0118532_62	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0118532_63	PHROG	phrog_6616	tail protein	tail
UHGV-0118532_63	UniRef90	UniRef90_UPI0008BC4959	gp58-like family protein	NA
UHGV-0118532_63	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0118532_63	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0118532_64	PHROG	phrog_372	tail protein	tail
UHGV-0118532_64	UniRef90	UniRef90_A0A3E3E6C0	Pilus assembly protein	NA
UHGV-0118532_64	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0118532_64	Pfam	PF05895	NA	DUF859
UHGV-0118532_64	COG	COG4675	Phage tail collar domain	NA
UHGV-0118532_65	PHROG	phrog_32509	NA	unknown function
UHGV-0118532_65	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0118532_65	Structural annotation	PF20622, NF033814	NA	NA
UHGV-0118532_66	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0118532_66	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0118532_66	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0118532_66	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0118532_66	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0118532_66	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA