UHGV-0118538

Genome information

vOTU vOTU-041915

Genome length 37,621 bps

CDS count 56

Completeness 83.49% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118538
vOTU ID	vOTU-041915
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285587
BioSample	SAMEA4378232
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.41
Jumbo phage	No

Genome content
Genome length	37,621 bps
GC content	49.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.08%
Average CDS length	614.52 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118538_1	KOfam	K14059	int; integrase	NA
UHGV-0118538_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0118538_1	UniRef90	UniRef90_A0A848EUF3	Site-specific integrase	NA
UHGV-0118538_1	eggNOG-mapper	1273103.NM10_01244	Belongs to the 'phage' integrase family	NA
UHGV-0118538_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0118538_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118538_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118538_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0118538_3	eggNOG-mapper	1273103.NM10_04343	NA	NA
UHGV-0118538_3	Structural annotation	PF16747	NA	NA
UHGV-0118538_4	eggNOG-mapper	1122217.KB899580_gene1656	NA	NA
UHGV-0118538_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0118538_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0118538_5	UniRef90	UniRef90_R7MYM3	LexA repressor family protein	NA
UHGV-0118538_5	eggNOG-mapper	1064535.MELS_1071	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0118538_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118538_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0118538_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0118538_5	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0118538_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0118538_6	UniRef90	UniRef90_R7MYI6	DNA-binding helix-turn-helix protein	NA
UHGV-0118538_6	eggNOG-mapper	272626.lin2421	sequence-specific DNA binding	NA
UHGV-0118538_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118538_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118538_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0118538_10	PHROG	phrog_2211	NA	unknown function
UHGV-0118538_10	UniRef90	UniRef90_A0A0A8WJ72	Putative phage protein	NA
UHGV-0118538_10	eggNOG-mapper	935948.KE386495_gene1208	NA	NA
UHGV-0118538_11	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0118538_11	Structural annotation	PF21531, NF033787	NA	NA
UHGV-0118538_12	PHROG	phrog_25045	NA	unknown function
UHGV-0118538_12	UniRef90	UniRef90_A0A848EVI2	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0118538_12	eggNOG-mapper	1273103.NM10_06871	LysM domain	NA
UHGV-0118538_12	Pfam	PF01476	LysM domain	LysM
UHGV-0118538_12	COG	COG1388	LysM repeat	NA
UHGV-0118538_12	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0118538_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0118538_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118538_13	UniRef90	UniRef90_A0A848ESC3	AAA family ATPase	NA
UHGV-0118538_13	eggNOG-mapper	1200557.JHWV01000006_gene1752	nuclear chromosome segregation	NA
UHGV-0118538_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0118538_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0118538_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0118538_14	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118538_14	UniRef90	UniRef90_UPI001D032ADE	recombinase RecT	NA
UHGV-0118538_14	eggNOG-mapper	557598.LHK_01792	NA	NA
UHGV-0118538_14	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0118538_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0118538_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0118538_15	UniRef90	UniRef90_A0A848EVL5	MBL fold metallo-hydrolase	NA
UHGV-0118538_15	eggNOG-mapper	926561.KB900622_gene661	Metallo-beta-lactamase superfamily	NA
UHGV-0118538_15	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0118538_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0118538_15	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0118538_16	PHROG	phrog_9403	NA	unknown function
UHGV-0118538_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0118538_17	UniRef90	UniRef90_A0A848EWT7	DnaD domain protein	NA
UHGV-0118538_17	eggNOG-mapper	864563.HMPREF9166_1274	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0118538_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0118538_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0118538_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0118538_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0118538_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0118538_18	UniRef90	UniRef90_A0A848EUI9	ATP-binding protein	NA
UHGV-0118538_18	eggNOG-mapper	546271.Selsp_1349	Primosomal protein DnaI	NA
UHGV-0118538_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0118538_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0118538_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0118538_20	Structural annotation	PF07867, MF_01302_B, NF001109	NA	NA
UHGV-0118538_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0118538_21	UniRef90	UniRef90_A0A848EWR1	NA	NA
UHGV-0118538_21	eggNOG-mapper	936573.HMPREF1147_1706	NA	NA
UHGV-0118538_21	Pfam	PF14359	NA	DUF4406
UHGV-0118538_21	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0118538_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118538_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118538_22	UniRef90	UniRef90_A0A848EVG3	Single-stranded DNA-binding protein	NA
UHGV-0118538_22	eggNOG-mapper	1391647.AVSV01000039_gene1087	Single-stranded DNA-binding protein	NA
UHGV-0118538_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118538_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118538_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118538_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118538_22	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0118538_23	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0118538_23	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118538_23	UniRef90	UniRef90_A0A1M6LPC9	DNA-binding protein HU-beta	NA
UHGV-0118538_23	eggNOG-mapper	1064535.MELS_1792	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0118538_23	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0118538_23	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0118538_23	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0118538_24	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0118538_26	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118538_26	UniRef90	UniRef90_A0A848EVK5	NA	NA
UHGV-0118538_26	eggNOG-mapper	1443125.Z962_05705	NA	NA
UHGV-0118538_26	Pfam	PF06356	NA	DUF1064
UHGV-0118538_26	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0118538_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118538_27	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-0118538_27	eggNOG-mapper	1273103.NM10_01099	NA	NA
UHGV-0118538_27	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-0118538_30	PHROG	phrog_2412	NA	unknown function
UHGV-0118538_30	UniRef90	UniRef90_UPI001106D0BC	KGG domain-containing protein	NA
UHGV-0118538_30	eggNOG-mapper	864563.HMPREF9166_1260	NA	NA
UHGV-0118538_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0118538_31	PHROG	phrog_10250	NA	unknown function
UHGV-0118538_31	UniRef90	UniRef90_C9LU77	Phage terminase, large subunit, PBSX family	NA
UHGV-0118538_31	eggNOG-mapper	864563.HMPREF9166_1259	Terminase-like family	NA
UHGV-0118538_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0118538_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0118538_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0118538_31	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0118538_32	KOfam	K09961	NA	NA
UHGV-0118538_32	PHROG	phrog_146	portal protein	head and packaging
UHGV-0118538_32	UniRef90	UniRef90_C9LU78	Phage-associated protein, HI1409 family	NA
UHGV-0118538_32	eggNOG-mapper	546271.Selsp_1337	NA	NA
UHGV-0118538_32	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0118538_32	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0118538_32	COG	COG3567	NA	NA
UHGV-0118538_32	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0118538_33	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0118538_33	UniRef90	UniRef90_J4TYK5	Phage protein F-like protein	NA
UHGV-0118538_33	eggNOG-mapper	936573.HMPREF1147_1326	Phage Mu protein F like protein	NA
UHGV-0118538_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0118538_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0118538_33	COG	COG2369	NA	NA
UHGV-0118538_33	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0118538_34	PHROG	phrog_15528	portal protein	head and packaging
UHGV-0118538_34	UniRef90	UniRef90_R6QTV7	Phage-associated protein HI1409 family	NA
UHGV-0118538_34	eggNOG-mapper	546271.Selsp_1337	NA	NA
UHGV-0118538_34	COG	COG3567	NA	NA
UHGV-0118538_35	PHROG	phrog_6332	NA	unknown function
UHGV-0118538_35	UniRef90	UniRef90_A0A3D1M5X2	Cys_rich_CPCC domain-containing protein	NA
UHGV-0118538_35	eggNOG-mapper	1151116.Q7S_04610	Cysteine-rich CPCC	NA
UHGV-0118538_35	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0118538_35	Structural annotation	PF14206	NA	NA
UHGV-0118538_36	PHROG	phrog_3675	NA	unknown function
UHGV-0118538_36	UniRef90	UniRef90_J4UZC0	YjcQ protein	NA
UHGV-0118538_36	eggNOG-mapper	936573.HMPREF1147_1325	YjcQ protein	NA
UHGV-0118538_36	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0118538_36	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0118538_37	KOfam	K09960	NA	NA
UHGV-0118538_37	PHROG	phrog_16985	NA	unknown function
UHGV-0118538_37	UniRef90	UniRef90_J5I3K2	PF09979 family protein	NA
UHGV-0118538_37	eggNOG-mapper	864563.HMPREF9166_1254	NA	NA
UHGV-0118538_37	Pfam	PF09979	NA	DUF2213
UHGV-0118538_37	COG	COG3566	NA	NA
UHGV-0118538_37	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0118538_38	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0118538_38	eggNOG-mapper	546271.Selsp_1332	NA	NA
UHGV-0118538_38	Structural annotation	PF09956	NA	NA
UHGV-0118538_39	PHROG	phrog_264	major head protein	head and packaging
UHGV-0118538_39	UniRef90	UniRef90_UPI001C39DBF5	NA	NA
UHGV-0118538_39	eggNOG-mapper	936573.HMPREF1147_1330	NA	NA
UHGV-0118538_39	Pfam	PF09950	NA	DUF2184
UHGV-0118538_39	COG	COG4834	NA	NA
UHGV-0118538_39	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0118538_41	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0118538_41	UniRef90	UniRef90_UPI001C3A0860	NA	NA
UHGV-0118538_41	eggNOG-mapper	936573.HMPREF1147_1332	NA	NA
UHGV-0118538_41	Pfam	PF13262	NA	DUF4054
UHGV-0118538_41	Structural annotation	PF13262	NA	NA
UHGV-0118538_42	PHROG	phrog_222	tail protein	tail
UHGV-0118538_42	UniRef90	UniRef90_C9LU87	Putative bacteriophage protein	NA
UHGV-0118538_42	eggNOG-mapper	864563.HMPREF9166_1249	NA	NA
UHGV-0118538_43	PHROG	phrog_939	head protein	head and packaging
UHGV-0118538_43	eggNOG-mapper	936573.HMPREF1147_1334	NA	NA
UHGV-0118538_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0118538_44	PHROG	phrog_1973	NA	unknown function
UHGV-0118538_44	UniRef90	UniRef90_A0A357NAG8	Aldehyde dehydrogenase	NA
UHGV-0118538_44	eggNOG-mapper	864563.HMPREF9166_1247	NA	NA
UHGV-0118538_44	Structural annotation	PF09646	NA	NA
UHGV-0118538_45	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0118538_45	UniRef90	UniRef90_J4TYJ6	PF11863 domain protein	NA
UHGV-0118538_45	eggNOG-mapper	546271.Selsp_1325	NA	NA
UHGV-0118538_45	Pfam	PF11863	NA	DUF3383
UHGV-0118538_45	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0118538_46	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0118538_46	UniRef90	UniRef90_J4TYN4	PF11681 family protein	NA
UHGV-0118538_46	eggNOG-mapper	546271.Selsp_1324	NA	NA
UHGV-0118538_46	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0118538_46	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0118538_47	eggNOG-mapper	546271.Selsp_1323	NA	NA
UHGV-0118538_47	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0118538_47	Structural annotation	PF21822	NA	NA
UHGV-0118538_48	PHROG	phrog_22539	NA	unknown function
UHGV-0118538_48	UniRef90	UniRef90_C9LU94	Phage_lysozyme2 domain-containing protein	NA
UHGV-0118538_48	eggNOG-mapper	546271.Selsp_1322	NA	NA
UHGV-0118538_48	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0118538_48	Structural annotation	PF18013, NF011856	NA	NA
UHGV-0118538_49	PHROG	phrog_817	tail fiber protein	tail
UHGV-0118538_49	eggNOG-mapper	936573.HMPREF1147_1341	NA	NA
UHGV-0118538_49	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0118538_49	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0118538_50	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0118538_50	eggNOG-mapper	936573.HMPREF1147_1342	NA	NA
UHGV-0118538_51	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0118538_51	eggNOG-mapper	546271.Selsp_1319	NA	NA
UHGV-0118538_51	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0118538_52	UniRef90	UniRef90_A0A0J6WTI5	Gp138_N domain-containing protein	NA
UHGV-0118538_52	eggNOG-mapper	936573.HMPREF1147_1344	Baseplate assembly protein	NA
UHGV-0118538_52	Pfam	PF18352	NA	Gp138_N
UHGV-0118538_52	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0118538_52	Structural annotation	PF18352, MF_01345_A, TIGR01644, COG4540	NA	NA
UHGV-0118538_53	PHROG	phrog_120	baseplate protein	tail
UHGV-0118538_53	UniRef90	UniRef90_A0A0U1KW63	Putative bacteriophage protein	NA
UHGV-0118538_53	eggNOG-mapper	546271.Selsp_1316	NA	NA
UHGV-0118538_53	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0118538_54	PHROG	phrog_6	baseplate protein	tail
UHGV-0118538_54	UniRef90	UniRef90_UPI001C396CFD	Baseplate J/gp47 family protein	NA
UHGV-0118538_54	eggNOG-mapper	546271.Selsp_1315	Baseplate J-like protein	NA
UHGV-0118538_54	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0118538_54	COG	COG3299	NA	NA
UHGV-0118538_54	Structural annotation	PF03434, PF21379, PF21110, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0118538_55	PHROG	phrog_587	structural protein	head and packaging
UHGV-0118538_55	UniRef90	UniRef90_J5I3C5	PF11041 domain protein	NA
UHGV-0118538_55	eggNOG-mapper	936573.HMPREF1147_1347	NA	NA
UHGV-0118538_55	Pfam	PF11041	NA	DUF2612
UHGV-0118538_55	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0118538_56	eggNOG-mapper	1232428.CAVO010000003_gene994	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0118538_56	COG	COG5301	Phage-related tail fiber protein	NA