UHGV-0118566

Genome information

Genome length 37,793 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9323

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118566
vOTU ID	vOTU-010411
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308568
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9323
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.01
Jumbo phage	No

Genome content
Genome length	37,793 bps
GC content	35.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.06%
Average CDS length	632.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118566_2	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0118566_2	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0118566_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0118566_3	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0118566_3	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-0118566_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0118566_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0118566_3	COG	COG1511	NA	NA
UHGV-0118566_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0118566_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0118566_4	UniRef90	UniRef90_UPI00073F69EF	phage tail family protein	NA
UHGV-0118566_4	eggNOG-mapper	1582149.A0A0A8WHP7_9CAUD	Phage tail protein	NA
UHGV-0118566_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0118566_5	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0118566_5	PHROG	phrog_5218	NA	unknown function
UHGV-0118566_5	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0118566_5	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0118566_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0118566_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0118566_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0118566_7	Structural annotation	PF11836	NA	NA
UHGV-0118566_8	PHROG	phrog_88	major tail protein	tail
UHGV-0118566_8	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0118566_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0118566_8	COG	COG5492	NA	NA
UHGV-0118566_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0118566_9	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0118566_9	eggNOG-mapper	1118057.CAGX01000043_gene486	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0118566_9	Structural annotation	TIGR01725	NA	NA
UHGV-0118566_10	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0118566_10	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0118566_11	PHROG	phrog_19734	NA	unknown function
UHGV-0118566_11	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0118566_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0118566_12	PHROG	phrog_749	NA	unknown function
UHGV-0118566_12	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0118566_12	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0118566_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0118566_13	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0118566_13	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0118566_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118566_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118566_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0118566_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118566_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118566_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0118566_14	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0118566_14	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0118566_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118566_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118566_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0118566_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0118566_15	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0118566_15	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0118566_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0118566_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0118566_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0118566_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0118566_16	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0118566_16	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0118566_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0118566_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0118566_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118566_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0118566_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0118566_17	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0118566_17	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0118566_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0118566_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0118566_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118566_18	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0118566_18	eggNOG-mapper	1123315.AUIP01000014_gene1945	HNH endonuclease	NA
UHGV-0118566_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0118566_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118566_19	Structural annotation	TIGR01636	NA	NA
UHGV-0118566_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118566_20	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0118566_20	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0118566_22	PHROG	phrog_824	NA	unknown function
UHGV-0118566_22	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0118566_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0118566_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0118566_22	Structural annotation	PF08774	NA	NA
UHGV-0118566_23	PHROG	phrog_24518	NA	unknown function
UHGV-0118566_23	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0118566_25	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0118566_25	UniRef90	UniRef90_A0A846K3D1	MazG domain-containing protein	NA
UHGV-0118566_25	eggNOG-mapper	926561.KB900623_gene754	NA	NA
UHGV-0118566_28	PHROG	phrog_24518	NA	unknown function
UHGV-0118566_28	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0118566_30	PHROG	phrog_15609	NA	unknown function
UHGV-0118566_30	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0118566_30	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0118566_30	Pfam	PF11300	NA	DUF3102
UHGV-0118566_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0118566_31	PHROG	phrog_8470	NA	unknown function
UHGV-0118566_31	UniRef90	UniRef90_UPI0015712426	PcfJ domain-containing protein	NA
UHGV-0118566_31	eggNOG-mapper	397288.C806_03897	PcfJ-like protein	NA
UHGV-0118566_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0118566_31	Structural annotation	PF14284	NA	NA
UHGV-0118566_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118566_36	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0118566_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118566_38	UniRef90	UniRef90_A0A367GFH2	Transcriptional regulator	NA
UHGV-0118566_38	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118566_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0118566_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0118566_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0118566_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118566_39	UniRef90	UniRef90_UPI00056F899A	transcriptional regulator	NA
UHGV-0118566_39	eggNOG-mapper	1211844.CBLM010000016_gene1522	Peptidase S24-like	NA
UHGV-0118566_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118566_39	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0118566_39	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0118566_40	PHROG	phrog_1914	NA	unknown function
UHGV-0118566_40	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0118566_40	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0118566_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0118566_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0118566_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0118566_41	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0118566_42	eggNOG-mapper	795955.AFRW01000079_gene238	TM2 domain	NA
UHGV-0118566_42	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0118566_42	COG	COG2314	NA	NA
UHGV-0118566_43	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0118566_43	UniRef90	UniRef90_A0A7X2NEB3	Addiction module toxin, HicA family	NA
UHGV-0118566_43	eggNOG-mapper	903814.ELI_3150	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0118566_43	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0118566_43	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0118566_43	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0118566_44	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0118566_44	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0118566_44	UniRef90	UniRef90_A0A1E7S2B4	HicB-like domain-containing protein	NA
UHGV-0118566_44	eggNOG-mapper	903814.ELI_3151	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0118566_44	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0118566_44	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0118566_44	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0118566_45	KOfam	K14059	int; integrase	NA
UHGV-0118566_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0118566_45	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0118566_45	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0118566_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0118566_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118566_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118566_45	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0118566_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0118566_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0118566_47	UniRef90	UniRef90_R6NV47	Recombinase family protein	NA
UHGV-0118566_47	eggNOG-mapper	935948.KE386495_gene1360	Resolvase, N terminal domain	NA
UHGV-0118566_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118566_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-0118566_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0118566_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118566_47	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0118566_50	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0118566_50	UniRef90	UniRef90_R6MS80	DNA/RNA helicase superfamily II	NA
UHGV-0118566_50	eggNOG-mapper	176279.SERP2483	NA	NA
UHGV-0118566_50	Pfam	PF06048	NA	DUF927
UHGV-0118566_50	COG	COG5519	NA	NA
UHGV-0118566_51	PHROG	phrog_3230	NA	unknown function
UHGV-0118566_51	UniRef90	UniRef90_UPI00164CC08E	NA	NA
UHGV-0118566_51	eggNOG-mapper	1122947.FR7_2704	NA	NA
UHGV-0118566_51	Pfam	PF07799	NA	DUF1643
UHGV-0118566_51	COG	COG4333	NA	NA
UHGV-0118566_51	Structural annotation	PF07799, COG4333	NA	NA
UHGV-0118566_55	UniRef90	UniRef90_R6MS84	RanBP2-type domain-containing protein	NA
UHGV-0118566_55	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0118566_56	PHROG	phrog_2700	NA	unknown function
UHGV-0118566_56	UniRef90	UniRef90_R6N5Q6	SHOCT domain-containing protein	NA
UHGV-0118566_56	Pfam	PF09851	Short C-terminal domain	SHOCT