UHGV-0118610

Genome information

Genome length 30,779 bps

CDS count 47

Completeness 74.64% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118610
vOTU ID	vOTU-032122
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292085
BioSample	SAMEA4431958
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.63
Jumbo phage	No

Genome content
Genome length	30,779 bps
GC content	48.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	89.92%
Average CDS length	592.34 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118610_2	PHROG	phrog_7854	endolysin	lysis
UHGV-0118610_2	UniRef90	UniRef90_A0A7U9JS63	Cell wall-binding repeat-containing protein	NA
UHGV-0118610_2	eggNOG-mapper	1304866.K413DRAFT_1237	NA	NA
UHGV-0118610_2	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0118610_3	PHROG	phrog_3558	tail protein	tail
UHGV-0118610_3	UniRef90	UniRef90_A0A2T3F0C5	Prophage_tail domain-containing protein	NA
UHGV-0118610_3	eggNOG-mapper	1304866.K413DRAFT_1236	Phage minor structural protein, N-terminal	NA
UHGV-0118610_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0118610_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0118610_3	COG	COG4926	Phage-related protein	NA
UHGV-0118610_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0118610_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0118610_4	UniRef90	UniRef90_A0A2T3F0D3	MtfA protein	NA
UHGV-0118610_4	eggNOG-mapper	610130.Closa_0753	phage tail	NA
UHGV-0118610_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0118610_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0118610_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0118610_4	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0118610_5	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0118610_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0118610_5	UniRef90	UniRef90_A0A2T3F096	PhageMin_Tail domain-containing protein	NA
UHGV-0118610_5	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0118610_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0118610_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0118610_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0118610_5	Structural annotation	PF10145, TIGR01760, NF006545, COG5280	NA	NA
UHGV-0118610_6	PHROG	phrog_3033	NA	unknown function
UHGV-0118610_6	UniRef90	UniRef90_D9R5H0	Phage-like protein	NA
UHGV-0118610_6	eggNOG-mapper	610130.Closa_0751	NA	NA
UHGV-0118610_7	PHROG	phrog_709	NA	unknown function
UHGV-0118610_7	eggNOG-mapper	1304866.K413DRAFT_1232	NA	NA
UHGV-0118610_7	Structural annotation	PF11836	NA	NA
UHGV-0118610_8	PHROG	phrog_88	major tail protein	tail
UHGV-0118610_8	UniRef90	UniRef90_A0A2T3F098	Phage tail protein	NA
UHGV-0118610_8	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0118610_8	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0118610_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0118610_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0118610_9	PHROG	phrog_78	tail terminator	connector
UHGV-0118610_9	eggNOG-mapper	1304866.K413DRAFT_1230	NA	NA
UHGV-0118610_9	Structural annotation	PF20765	NA	NA
UHGV-0118610_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0118610_10	UniRef90	UniRef90_A0A7G9G6Y9	HK97 gp10 family phage protein	NA
UHGV-0118610_10	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-0118610_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0118610_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0118610_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-0118610_11	UniRef90	UniRef90_A0A2T3F085	Head-tail adaptor protein	NA
UHGV-0118610_11	eggNOG-mapper	1304866.K413DRAFT_1228	head-tail adaptor	NA
UHGV-0118610_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0118610_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0118610_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0118610_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0118610_12	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0118610_12	UniRef90	UniRef90_A0A3E2NFZ7	Phage gp6-like head-tail connector protein	NA
UHGV-0118610_12	eggNOG-mapper	1391647.AVSV01000039_gene1101	Phage gp6-like head-tail connector protein	NA
UHGV-0118610_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0118610_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0118610_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0118610_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0118610_13	UniRef90	UniRef90_A0A2T3F0H1	Phage major capsid protein	NA
UHGV-0118610_13	eggNOG-mapper	411459.RUMOBE_00935	phage major capsid protein, HK97 family	NA
UHGV-0118610_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118610_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118610_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0118610_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118610_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118610_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0118610_14	UniRef90	UniRef90_A0A2T3F0C0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0118610_14	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0118610_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118610_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118610_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0118610_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0118610_15	UniRef90	UniRef90_A0A2T3F0B3	Phage portal protein	NA
UHGV-0118610_15	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0118610_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0118610_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0118610_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0118610_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0118610_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0118610_16	UniRef90	UniRef90_A0A2T3F083	Terminase large subunit	NA
UHGV-0118610_16	eggNOG-mapper	1095750.HMPREF9970_2266	Phage terminase-like protein large subunit	NA
UHGV-0118610_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0118610_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0118610_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118610_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0118610_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0118610_17	UniRef90	UniRef90_A0A2T3F076	Phage terminase small subunit P27 family	NA
UHGV-0118610_17	eggNOG-mapper	536232.CLM_1655	Phage terminase, small subunit	NA
UHGV-0118610_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0118610_17	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0118610_17	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0118610_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0118610_18	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118610_18	UniRef90	UniRef90_A0A849D0W5	HNH endonuclease	NA
UHGV-0118610_18	eggNOG-mapper	97139.C824_05975	HNH nucleases	NA
UHGV-0118610_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118610_19	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0118610_19	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0118610_19	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0118610_20	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0118610_20	UniRef90	UniRef90_UPI000CF2B432	tyrosine-type recombinase/integrase	NA
UHGV-0118610_20	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0118610_20	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0118610_20	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0118610_21	PHROG	phrog_25231	NA	unknown function
UHGV-0118610_21	eggNOG-mapper	411902.CLOBOL_05673	NA	NA
UHGV-0118610_22	PHROG	phrog_2316	NA	unknown function
UHGV-0118610_22	UniRef90	UniRef90_UPI000471C257	NA	NA
UHGV-0118610_22	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0118610_22	Pfam	PF16475	NA	DUF5052
UHGV-0118610_22	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0118610_24	UniRef90	UniRef90_UPI000D1A26B1	Lar family restriction alleviation protein	NA
UHGV-0118610_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0118610_25	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0118610_25	Structural annotation	PF13248	NA	NA
UHGV-0118610_27	AcrCatalog	cluster_222026	NA	NA
UHGV-0118610_31	PHROG	phrog_24920	NA	unknown function
UHGV-0118610_31	UniRef90	UniRef90_C0CV94	LexA DNA binding domain protein	NA
UHGV-0118610_31	eggNOG-mapper	411902.CLOBOL_05676	LexA DNA binding domain	NA
UHGV-0118610_31	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0118610_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0118610_31	Structural annotation	PF01726, MF_00732, TIGR00738, COG1959	NA	NA
UHGV-0118610_33	PHROG	phrog_15768	NA	unknown function
UHGV-0118610_33	UniRef90	UniRef90_C0DA60	NA	NA
UHGV-0118610_33	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0118610_33	AcrCatalog	cluster_38323	NA	NA
UHGV-0118610_33	Pfam	PF19808	NA	DUF6291
UHGV-0118610_33	Structural annotation	PF19808	NA	NA
UHGV-0118610_34	PHROG	phrog_7566	NA	unknown function
UHGV-0118610_34	UniRef90	UniRef90_A0A2T3EXD0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0118610_34	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0118610_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0118610_35	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0118610_36	PHROG	phrog_14970	NA	unknown function
UHGV-0118610_36	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0118610_36	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0118610_36	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0118610_37	Structural annotation	PF11302, MF_00085, NF003076, COG0231	NA	NA
UHGV-0118610_38	UniRef90	UniRef90_UPI00164E5F09	nitrogenase molybdenum-iron protein subunit beta	NA
UHGV-0118610_40	PHROG	phrog_30542	NA	unknown function
UHGV-0118610_40	eggNOG-mapper	2754.EH55_12835	NA	NA
UHGV-0118610_40	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-0118610_41	Structural annotation	PF10743, TIGR01764, COG4220	NA	NA
UHGV-0118610_43	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0118610_44	PHROG	phrog_17486	NA	unknown function
UHGV-0118610_44	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0118610_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0118610_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118610_45	UniRef90	UniRef90_U2DIE4	DNA-binding helix-turn-helix protein	NA
UHGV-0118610_45	eggNOG-mapper	397290.C810_05152	DNA-binding helix-turn-helix protein	NA
UHGV-0118610_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118610_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118610_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0118610_47	KOfam	K14059	int; integrase	NA
UHGV-0118610_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0118610_47	UniRef90	UniRef90_A0A1I0K1F7	Tyr recombinase domain-containing protein	NA
UHGV-0118610_47	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0118610_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118610_47	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA