UHGV-0118614

Genome information

Genome length 53,011 bps

CDS count 77

Completeness 71.35% (medium-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118614
vOTU ID	vOTU-034741
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292078
BioSample	SAMEA4431958
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	71.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.45
Jumbo phage	No

Genome content
Genome length	53,011 bps
GC content	37.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	90.65%
Average CDS length	627.90 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118614_1	KOfam	K14059	int; integrase	NA
UHGV-0118614_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0118614_1	UniRef90	UniRef90_A0A223MJQ4	Site-specific integrase	NA
UHGV-0118614_1	eggNOG-mapper	552396.HMPREF0863_02449	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0118614_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0118614_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0118614_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118614_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118614_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0118614_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0118614_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0118614_2	UniRef90	UniRef90_UPI000E4CC309	helix-turn-helix domain-containing protein	NA
UHGV-0118614_2	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118614_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118614_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0118614_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0118614_2	Structural annotation	PF00717, PF01381, MF_00015, MF_00535, TIGR00498, NF041951, COG1974	NA	NA
UHGV-0118614_3	UniRef90	UniRef90_A0A372SX35	NA	NA
UHGV-0118614_3	eggNOG-mapper	1121947.AUHK01000002_gene903	NA	NA
UHGV-0118614_3	Pfam	PF05339	NA	DUF739
UHGV-0118614_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0118614_3	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0118614_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0118614_4	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0118614_4	UniRef90	UniRef90_UPI000ADC2C60	phage antirepressor KilAC domain-containing protein	NA
UHGV-0118614_4	eggNOG-mapper	1123250.KB908434_gene5	Phage antirepressor protein KilAC domain	NA
UHGV-0118614_4	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0118614_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0118614_4	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0118614_4	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-0118614_7	eggNOG-mapper	1423775.BAMN01000014_gene788	NA	NA
UHGV-0118614_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118614_12	UniRef90	UniRef90_UPI001C38BFBC	YqaJ viral recombinase family protein	NA
UHGV-0118614_12	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0118614_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0118614_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0118614_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0118614_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0118614_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0118614_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118614_13	UniRef90	UniRef90_UPI001C38745C	recombinase RecT	NA
UHGV-0118614_13	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0118614_13	Pfam	PF03837	RecT family	RecT
UHGV-0118614_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0118614_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0118614_13	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0118614_15	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0118614_15	UniRef90	UniRef90_UPI001C0ED106	replication terminator protein	NA
UHGV-0118614_15	eggNOG-mapper	1486428.A0A097BY30_9CAUD	NA	NA
UHGV-0118614_16	PHROG	phrog_1029	NA	unknown function
UHGV-0118614_16	eggNOG-mapper	1232449.BAHV02000016_gene1838	NA	NA
UHGV-0118614_16	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0118614_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0118614_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118614_17	UniRef90	UniRef90_A0A7G9GLS4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0118614_17	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0118614_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0118614_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0118614_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0118614_19	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-0118614_20	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118614_20	UniRef90	UniRef90_UPI001553F285	helix-turn-helix domain-containing protein	NA
UHGV-0118614_20	eggNOG-mapper	1122173.AXVL01000001_gene1649	NA	NA
UHGV-0118614_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0118614_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0118614_20	Structural annotation	PF02334, MF_01909, NF040939, COG1675	NA	NA
UHGV-0118614_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0118614_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0118614_21	UniRef90	UniRef90_UPI00163D4A7C	ATP-binding protein	NA
UHGV-0118614_21	eggNOG-mapper	1211844.CBLM010000016_gene1509	NA	NA
UHGV-0118614_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0118614_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0118614_21	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0118614_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118614_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118614_23	UniRef90	UniRef90_UPI000E4AD585	DNA cytosine methyltransferase	NA
UHGV-0118614_23	eggNOG-mapper	1027396.LMOSA_9370	C-5 cytosine-specific DNA methylase	NA
UHGV-0118614_23	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0118614_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118614_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118614_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118614_23	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0118614_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118614_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118614_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118614_25	UniRef90	UniRef90_A0A371JBS1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118614_25	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-0118614_25	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0118614_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118614_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118614_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118614_25	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0118614_26	PHROG	phrog_3032	NA	unknown function
UHGV-0118614_26	Structural annotation	PF18358	NA	NA
UHGV-0118614_27	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0118614_27	UniRef90	UniRef90_A0A7W4VFI6	L-amino acid N-acyltransferase YncA	NA
UHGV-0118614_27	eggNOG-mapper	411490.ANACAC_02385	COG NOG12663 non supervised orthologous group	NA
UHGV-0118614_27	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0118614_28	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0118614_28	UniRef90	UniRef90_A0A099I3S3	Methyltransferase	NA
UHGV-0118614_28	eggNOG-mapper	908340.HMPREF9406_3501	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0118614_28	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0118614_28	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0118614_28	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0118614_28	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0118614_29	PHROG	phrog_874	NA	unknown function
UHGV-0118614_29	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0118614_29	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0118614_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0118614_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118614_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118614_32	UniRef90	UniRef90_UPI001C384F19	single-stranded DNA-binding protein	NA
UHGV-0118614_32	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0118614_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118614_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118614_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118614_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118614_32	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0118614_33	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0118614_37	PHROG	phrog_12834	NA	unknown function
UHGV-0118614_37	eggNOG-mapper	1123013.AUIC01000006_gene1279	NA	NA
UHGV-0118614_37	Structural annotation	PF07065, MF_00047, NF004085, COG1181	NA	NA
UHGV-0118614_39	Structural annotation	PF08281, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0118614_42	Pfam	PF20323	NA	DUF6618
UHGV-0118614_42	Structural annotation	PF20323	NA	NA
UHGV-0118614_45	PHROG	phrog_3032	NA	unknown function
UHGV-0118614_46	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0118614_46	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0118614_46	COG	COG5484	NA	NA
UHGV-0118614_53	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0118614_53	UniRef90	UniRef90_UPI001D063AE7	phage terminase large subunit	NA
UHGV-0118614_53	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0118614_53	COG	COG5410	NA	NA
UHGV-0118614_53	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0118614_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118614_54	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0118614_54	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118614_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118614_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118614_55	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0118614_55	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0118614_55	Structural annotation	PF14265	NA	NA
UHGV-0118614_56	PHROG	phrog_909	major head protein	head and packaging
UHGV-0118614_56	eggNOG-mapper	476272.RUMHYD_01945	NA	NA
UHGV-0118614_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0118614_57	UniRef90	UniRef90_UPI000CDB6260	major capsid protein	NA
UHGV-0118614_57	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0118614_57	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0118614_57	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0118614_59	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-0118614_62	eggNOG-mapper	1235800.C819_00481	NA	NA
UHGV-0118614_62	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0118614_63	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0118614_64	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0118614_67	PHROG	phrog_3845	NA	unknown function
UHGV-0118614_67	eggNOG-mapper	552396.HMPREF0863_04116	NA	NA
UHGV-0118614_67	Pfam	PF17032	zinc-ribbon family	zinc_ribbon_15
UHGV-0118614_68	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0118614_68	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0118614_68	UniRef90	UniRef90_A8RD17	Cation diffusion facilitator family transporter	NA
UHGV-0118614_68	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0118614_68	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0118614_69	PHROG	phrog_1194	NA	unknown function
UHGV-0118614_69	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0118614_69	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0118614_71	PHROG	phrog_1401	NA	unknown function
UHGV-0118614_71	Structural annotation	PF07761	NA	NA
UHGV-0118614_72	PHROG	phrog_16267	NA	unknown function
UHGV-0118614_72	UniRef90	UniRef90_UPI0006C02713	tail fiber domain-containing protein	NA
UHGV-0118614_72	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0118614_72	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0118614_72	COG	COG4926	Phage-related protein	NA
UHGV-0118614_72	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0118614_74	PHROG	phrog_1863	NA	unknown function
UHGV-0118614_74	eggNOG-mapper	1232449.BAHV02000017_gene1511	NA	NA
UHGV-0118614_75	UniRef90	UniRef90_A0A1C7HSY4	CHAP domain-containing protein	NA
UHGV-0118614_75	eggNOG-mapper	658659.HMPREF0983_03290	lysozyme activity	NA
UHGV-0118614_75	Pfam	PF05257	CHAP domain	CHAP
UHGV-0118614_75	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0118614_75	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0118614_76	KOfam	K06993	K06993; ribonuclease H-related protein	NA
UHGV-0118614_76	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0118614_76	UniRef90	UniRef90_UPI001F059722	viroplasmin family protein	NA
UHGV-0118614_76	eggNOG-mapper	1095750.HMPREF9970_0245	Caulimovirus viroplasmin	NA
UHGV-0118614_76	Pfam	PF01693	Caulimovirus viroplasmin	Cauli_VI
UHGV-0118614_76	Pfam	PF00075	RNase H	RNase_H
UHGV-0118614_76	Pfam	PF19034	RNase LS, bacterial toxin DBD domain	RnlA-toxin_DBD
UHGV-0118614_76	COG	COG3341	Ribonuclease HI-related protein, contains viroplasmin and RNaseH domains	NA
UHGV-0118614_76	Structural annotation	PF01693, PF00075, PF15935, PF19034, MF_00042, NF041175, COG0328	NA	NA
UHGV-0118614_77	UniRef90	UniRef90_UPI00158F3EA4	type II toxin-antitoxin system RnlB family antitoxin	NA
UHGV-0118614_77	Pfam	PF15933	Antitoxin to bacterial toxin RNase LS or RnlA	RnlB_antitoxin