UHGV-0118691

Genome information

Genome length 20,277 bps

CDS count 29

Completeness 63.50% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118691
vOTU ID	vOTU-040140
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309174
BioSample	SAMEA37062418
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.23
Jumbo phage	No

Genome content
Genome length	20,277 bps
GC content	50.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	95.72%
Average CDS length	671.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118691_1	PHROG	phrog_1066	NA	unknown function
UHGV-0118691_1	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0118691_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0118691_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0118691_2	UniRef90	UniRef90_A0A1Q8Q3G7	Terminase	NA
UHGV-0118691_2	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0118691_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0118691_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0118691_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118691_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0118691_3	PHROG	phrog_21498	NA	unknown function
UHGV-0118691_3	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0118691_3	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0118691_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0118691_3	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0118691_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0118691_4	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0118691_4	eggNOG-mapper	318464.IO99_13760	Portal protein	NA
UHGV-0118691_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0118691_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0118691_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0118691_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118691_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0118691_5	UniRef90	UniRef90_A0A7X8VAF7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0118691_5	eggNOG-mapper	888049.HMPREF8578_0265	Belongs to the peptidase S14 family	NA
UHGV-0118691_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118691_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118691_5	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0118691_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0118691_6	UniRef90	UniRef90_A0A316PXV5	Phage major capsid protein	NA
UHGV-0118691_6	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0118691_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118691_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118691_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0118691_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118691_7	PHROG	phrog_5223	neck protein	connector
UHGV-0118691_7	eggNOG-mapper	1033738.CAEP01000018_gene3674	NA	NA
UHGV-0118691_7	Structural annotation	TIGR01560	NA	NA
UHGV-0118691_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0118691_8	UniRef90	UniRef90_UPI00149422ED	phage head closure protein	NA
UHGV-0118691_8	eggNOG-mapper	1121423.JONT01000041_gene949	head-tail adaptor	NA
UHGV-0118691_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0118691_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0118691_9	UniRef90	UniRef90_A0A1S8NWK6	HK97 gp10 family phage protein	NA
UHGV-0118691_9	eggNOG-mapper	1384057.CD33_14160	NA	NA
UHGV-0118691_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0118691_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0118691_10	UniRef90	UniRef90_A0A0Z8KW16	Prophage pi2 protein 38	NA
UHGV-0118691_10	eggNOG-mapper	1158604.I591_01762	NA	NA
UHGV-0118691_10	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0118691_11	PHROG	phrog_88	major tail protein	tail
UHGV-0118691_11	UniRef90	UniRef90_UPI001915967A	phage tail protein	NA
UHGV-0118691_11	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0118691_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0118691_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0118691_12	PHROG	phrog_709	NA	unknown function
UHGV-0118691_12	eggNOG-mapper	938289.CAJN020000007_gene302	NA	NA
UHGV-0118691_12	Structural annotation	PF11836	NA	NA
UHGV-0118691_13	PHROG	phrog_23464	NA	unknown function
UHGV-0118691_13	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0118691_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0118691_13	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0118691_14	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0118691_14	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0118691_14	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0118691_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0118691_15	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0118691_15	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0118691_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0118691_15	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0118691_16	PHROG	phrog_30034	NA	unknown function
UHGV-0118691_16	UniRef90	UniRef90_A0A6N2WHD6	Carbohydrate binding domain protein	NA
UHGV-0118691_16	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0118691_16	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0118691_17	PHROG	phrog_9994	NA	unknown function
UHGV-0118691_17	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0118691_17	Structural annotation	PF20747	NA	NA
UHGV-0118691_18	PHROG	phrog_1129	holin	lysis
UHGV-0118691_18	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0118691_18	eggNOG-mapper	552396.HMPREF0863_01649	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0118691_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0118691_18	Structural annotation	PF06946	NA	NA
UHGV-0118691_19	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0118691_19	PHROG	phrog_297	holin	lysis
UHGV-0118691_19	UniRef90	UniRef90_A0A317I9P2	Peptidase_M23 domain-containing protein	NA
UHGV-0118691_19	eggNOG-mapper	1120998.AUFC01000030_gene2250	heme binding	NA
UHGV-0118691_19	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0118691_19	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0118691_19	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0118691_21	KOfam	K02405	fliA, whiG; RNA polymerase sigma factor FliA	NA
UHGV-0118691_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118691_21	eggNOG-mapper	667014.Thein_0190	Sigma-70, region 4	NA
UHGV-0118691_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0118691_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0118691_21	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0118691_22	Structural annotation	NF033819	NA	NA
UHGV-0118691_23	PHROG	phrog_16490	NA	unknown function
UHGV-0118691_23	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0118691_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0118691_26	UniRef90	UniRef90_R6ERY8	DNA-binding helix-turn-helix protein	NA
UHGV-0118691_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118691_28	UniRef90	UniRef90_A0A2G2M2K8	AP2 domain-containing protein	NA
UHGV-0118691_28	eggNOG-mapper	478749.BRYFOR_06178	AP2 domain protein	NA