UHGV-0118707

Genome information

Genome length 42,040 bps

CDS count 64

Completeness 73.42% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118707
vOTU ID	vOTU-032425
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_278854
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.65
Jumbo phage	No

Genome content
Genome length	42,040 bps
GC content	40.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.38%
Average CDS length	591.89 bps
tRNA count	5
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118707_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0118707_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0118707_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0118707_2	UniRef90	UniRef90_R6C0D1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0118707_2	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0118707_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0118707_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0118707_2	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0118707_4	Structural annotation	PF20556	NA	NA
UHGV-0118707_8	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0118707_8	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0118707_8	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0118707_8	COG	COG5410	NA	NA
UHGV-0118707_8	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0118707_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118707_9	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0118707_9	eggNOG-mapper	411459.RUMOBE_01043	NA	NA
UHGV-0118707_9	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0118707_10	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0118707_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0118707_11	UniRef90	UniRef90_UPI001D0761B7	phage portal protein	NA
UHGV-0118707_11	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0118707_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0118707_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0118707_12	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0118707_13	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0118707_14	PHROG	phrog_29	major head protein	head and packaging
UHGV-0118707_14	UniRef90	UniRef90_R6CEC6	Phage major capsid protein E	NA
UHGV-0118707_14	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0118707_14	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0118707_14	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0118707_15	Structural annotation	PF21169	NA	NA
UHGV-0118707_16	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0118707_17	PHROG	phrog_4105	NA	unknown function
UHGV-0118707_17	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0118707_18	PHROG	phrog_1129	holin	lysis
UHGV-0118707_18	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0118707_18	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0118707_18	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0118707_18	Structural annotation	PF06946	NA	NA
UHGV-0118707_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0118707_20	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0118707_20	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0118707_20	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0118707_21	Structural annotation	PF05657	NA	NA
UHGV-0118707_22	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0118707_22	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0118707_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0118707_25	PHROG	phrog_291	endolysin	lysis
UHGV-0118707_25	UniRef90	UniRef90_UPI001D05F2B6	peptidoglycan-binding protein	NA
UHGV-0118707_25	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0118707_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0118707_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0118707_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0118707_25	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0118707_26	PHROG	phrog_28918	NA	unknown function
UHGV-0118707_26	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0118707_26	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0118707_27	PHROG	phrog_1194	NA	unknown function
UHGV-0118707_27	Pfam	PF20458	NA	DUF6711
UHGV-0118707_27	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0118707_28	PHROG	phrog_18190	NA	unknown function
UHGV-0118707_28	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0118707_28	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0118707_28	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0118707_30	PHROG	phrog_17196	kinase	other
UHGV-0118707_30	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0118707_32	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0118707_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118707_32	UniRef90	UniRef90_UPI001ADDE640	helix-turn-helix domain-containing protein	NA
UHGV-0118707_32	eggNOG-mapper	699218.HMPREF0889_0317	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0118707_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118707_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0118707_32	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0118707_33	UniRef90	UniRef90_R5GPD4	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0118707_33	eggNOG-mapper	699218.HMPREF0889_0316	NA	NA
UHGV-0118707_33	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0118707_40	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0118707_40	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0118707_40	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0118707_40	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0118707_40	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0118707_40	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0118707_42	PHROG	phrog_19890	NA	unknown function
UHGV-0118707_42	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0118707_42	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0118707_42	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0118707_42	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0118707_42	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0118707_43	PHROG	phrog_22292	NA	unknown function
UHGV-0118707_46	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0118707_46	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118707_46	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0118707_46	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0118707_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0118707_46	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0118707_47	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0118707_48	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118707_48	UniRef90	UniRef90_UPI001D08E6D4	phage recombination protein Bet	NA
UHGV-0118707_48	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0118707_48	Pfam	PF03837	RecT family	RecT
UHGV-0118707_48	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0118707_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0118707_48	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0118707_49	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0118707_49	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0118707_49	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0118707_50	PHROG	phrog_25456	NA	unknown function
UHGV-0118707_51	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0118707_51	PHROG	phrog_11371	NA	unknown function
UHGV-0118707_51	UniRef90	UniRef90_UPI001C033A7E	N-6 DNA methylase	NA
UHGV-0118707_51	eggNOG-mapper	1437608.BBIA_1421	Type II restriction enzyme, methylase subunits	NA
UHGV-0118707_51	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0118707_51	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0118707_51	Structural annotation	PF20473, NF041658	NA	NA
UHGV-0118707_52	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0118707_53	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0118707_53	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0118707_53	UniRef90	UniRef90_A0A352SIH6	Lactamase_B domain-containing protein	NA
UHGV-0118707_53	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0118707_53	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0118707_53	dbAPIS	APIS058	NA	NA
UHGV-0118707_53	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0118707_53	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0118707_54	PHROG	phrog_19106	NA	unknown function
UHGV-0118707_54	UniRef90	UniRef90_UPI001D086F0C	GIY-YIG nuclease family protein	NA
UHGV-0118707_54	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0118707_54	Structural annotation	TIGR01453	NA	NA
UHGV-0118707_55	PHROG	phrog_22725	NA	unknown function
UHGV-0118707_55	eggNOG-mapper	397290.C810_01475	NA	NA
UHGV-0118707_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118707_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118707_56	UniRef90	UniRef90_A0A2K4ZLS3	Single-stranded DNA-binding protein	NA
UHGV-0118707_56	eggNOG-mapper	1410632.JHWW01000001_gene1026	Single-strand binding protein family	NA
UHGV-0118707_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118707_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118707_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118707_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118707_56	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0118707_57	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0118707_57	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0118707_57	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0118707_58	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-0118707_62	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0118707_62	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0118707_62	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0118707_62	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0118707_62	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0118707_62	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0118707_62	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0118707_62	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0118707_63	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0118707_63	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0118707_63	UniRef90	UniRef90_A0A173RED2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118707_63	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0118707_63	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0118707_63	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0118707_63	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0118707_63	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0118707_63	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0118707_64	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0118707_64	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA