UHGV-0118756

Genome information

Genome length 36,593 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118756
vOTU ID	vOTU-045789
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_287545
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.32
Jumbo phage	No

Genome content
Genome length	36,593 bps
GC content	59.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.36%
Average CDS length	580.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118756_1	Structural annotation	PF06657	NA	NA
UHGV-0118756_3	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0118756_3	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118756_3	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0118756_3	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0118756_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0118756_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118756_3	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0118756_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118756_6	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0118756_6	Structural annotation	PF05840	NA	NA
UHGV-0118756_7	UniRef90	UniRef90_UPI001D014F8E	cysteine-rich KTR domain-containing protein	NA
UHGV-0118756_7	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0118756_7	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0118756_7	Structural annotation	PF14205	NA	NA
UHGV-0118756_8	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118756_8	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0118756_8	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0118756_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0118756_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118756_8	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0118756_9	PHROG	phrog_21498	NA	unknown function
UHGV-0118756_9	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0118756_9	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0118756_9	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0118756_9	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0118756_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0118756_9	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0118756_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0118756_10	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0118756_10	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0118756_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0118756_10	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0118756_10	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0118756_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0118756_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0118756_11	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0118756_11	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0118756_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0118756_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0118756_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118756_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0118756_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0118756_13	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0118756_13	eggNOG-mapper	1007103.AFHW01000142_gene1297	Phage portal protein	NA
UHGV-0118756_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0118756_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0118756_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0118756_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0118756_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118756_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0118756_14	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0118756_14	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0118756_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118756_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118756_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0118756_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0118756_15	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0118756_15	eggNOG-mapper	411902.CLOBOL_03879	Phage capsid family	NA
UHGV-0118756_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118756_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118756_15	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118756_16	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0118756_16	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0118756_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0118756_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0118756_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0118756_17	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0118756_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0118756_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0118756_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0118756_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0118756_18	UniRef90	UniRef90_UPI00102FC317	phage tail protein	NA
UHGV-0118756_18	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0118756_18	Structural annotation	PF05657	NA	NA
UHGV-0118756_19	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0118756_19	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0118756_19	Structural annotation	TIGR01725	NA	NA
UHGV-0118756_20	PHROG	phrog_88	major tail protein	tail
UHGV-0118756_20	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0118756_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0118756_22	PHROG	phrog_23464	NA	unknown function
UHGV-0118756_22	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0118756_22	COG	COG5412	Phage-related protein	NA
UHGV-0118756_22	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0118756_24	PHROG	phrog_32744	NA	unknown function
UHGV-0118756_24	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0118756_24	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0118756_25	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0118756_25	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0118756_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0118756_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0118756_25	Structural annotation	PF18463	NA	NA
UHGV-0118756_26	PHROG	phrog_4105	NA	unknown function
UHGV-0118756_26	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0118756_27	PHROG	phrog_13256	NA	unknown function
UHGV-0118756_27	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0118756_29	PHROG	phrog_18955	NA	unknown function
UHGV-0118756_29	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0118756_29	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0118756_29	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0118756_29	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0118756_30	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0118756_30	PHROG	phrog_894	endolysin	lysis
UHGV-0118756_30	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0118756_30	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0118756_30	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0118756_30	COG	COG3108	NA	NA
UHGV-0118756_30	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0118756_31	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0118756_34	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0118756_34	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118756_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118756_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118756_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0118756_35	AcrCatalog	cluster_11486	NA	NA
UHGV-0118756_38	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0118756_40	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0118756_41	KOfam	K14059	int; integrase	NA
UHGV-0118756_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0118756_41	UniRef90	UniRef90_G4L0W3	Tyr recombinase domain-containing protein	NA
UHGV-0118756_41	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0118756_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118756_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118756_41	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0118756_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118756_42	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0118756_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0118756_45	UniRef90	UniRef90_G4L1F8	Putative Xre family DNA-binding protein	NA
UHGV-0118756_45	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-0118756_45	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0118756_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0118756_45	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0118756_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0118756_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118756_46	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0118756_46	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0118756_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118756_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0118756_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0118756_47	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0118756_47	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0118756_48	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0118756_48	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0118756_48	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0118756_48	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0118756_48	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0118756_48	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0118756_49	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118756_49	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0118756_49	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0118756_49	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0118756_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0118756_49	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0118756_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0118756_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0118756_50	UniRef90	UniRef90_UPI001875E60F	replicative DNA helicase	NA
UHGV-0118756_50	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0118756_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0118756_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0118756_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0118756_50	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0118756_52	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0118756_52	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0118756_52	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0118756_52	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0118756_52	Pfam	PF13614	AAA domain	AAA_31
UHGV-0118756_52	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0118756_52	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0118756_53	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0118756_53	PHROG	phrog_27290	NA	unknown function
UHGV-0118756_53	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0118756_53	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0118756_53	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0118756_53	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0118756_53	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0118756_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118756_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118756_55	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0118756_55	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0118756_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118756_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118756_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118756_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118756_55	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0118756_56	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0118756_56	Pfam	PF04448	NA	DUF551
UHGV-0118756_56	Structural annotation	NF041588	NA	NA