UHGV-0118804

Genome information

Genome length 39,272 bps

CDS count 57

Completeness 98.83% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118804
vOTU ID	vOTU-007657
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_284389
BioSample	SAMEA4378252
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.8
Jumbo phage	No

Genome content
Genome length	39,272 bps
GC content	58.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.78%
Average CDS length	648.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118804_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0118804_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0118804_1	UniRef90	UniRef90_A0A845R7H2	Recombinase family protein	NA
UHGV-0118804_1	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0118804_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118804_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0118804_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0118804_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118804_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0118804_2	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0118804_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118804_2	UniRef90	UniRef90_UPI000AF28170	helix-turn-helix transcriptional regulator	NA
UHGV-0118804_2	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0118804_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118804_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0118804_4	UniRef90	UniRef90_UPI000A3FFA65	helix-turn-helix domain-containing protein	NA
UHGV-0118804_4	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-0118804_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0118804_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118804_11	Structural annotation	PF09486, NF033887	NA	NA
UHGV-0118804_15	UniRef90	UniRef90_H1B4M2	NUMOD4 domain-containing protein	NA
UHGV-0118804_15	eggNOG-mapper	999413.HMPREF1094_04725	NA	NA
UHGV-0118804_15	Structural annotation	PF20987	NA	NA
UHGV-0118804_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118804_22	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0118804_22	eggNOG-mapper	665956.HMPREF1032_00135	NA	NA
UHGV-0118804_22	Structural annotation	PF21578, TIGR00166	NA	NA
UHGV-0118804_23	PHROG	phrog_824	NA	unknown function
UHGV-0118804_23	UniRef90	UniRef90_A0A1Y4GVA7	VRR-NUC domain-containing protein	NA
UHGV-0118804_23	eggNOG-mapper	1232452.BAIB02000007_gene1645	VRR_NUC	NA
UHGV-0118804_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0118804_24	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0118804_24	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0118804_24	UniRef90	UniRef90_G9RV30	AAA_31 domain-containing protein	NA
UHGV-0118804_24	eggNOG-mapper	665956.HMPREF1032_00131	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0118804_24	Pfam	PF13614	AAA domain	AAA_31
UHGV-0118804_24	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0118804_24	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0118804_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0118804_25	PHROG	phrog_15982	NA	unknown function
UHGV-0118804_25	UniRef90	UniRef90_G9RV29	ParB domain-containing protein	NA
UHGV-0118804_25	eggNOG-mapper	665956.HMPREF1032_00130	ParB-like nuclease domain	NA
UHGV-0118804_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0118804_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0118804_25	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0118804_26	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0118804_26	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0118804_26	UniRef90	UniRef90_A0A7G5MPY0	DNA methyltransferase	NA
UHGV-0118804_26	eggNOG-mapper	397288.C806_04323	MT-A70	NA
UHGV-0118804_26	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0118804_26	Pfam	PF05063	MT-A70	MT-A70
UHGV-0118804_26	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0118804_26	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0118804_28	PHROG	phrog_3136	NA	unknown function
UHGV-0118804_28	UniRef90	UniRef90_UPI001C018CFA	ASCH domain-containing protein	NA
UHGV-0118804_28	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0118804_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0118804_28	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0118804_30	PHROG	phrog_24386	NA	unknown function
UHGV-0118804_30	UniRef90	UniRef90_A0A2K9V2Y7	Polynucleotide kinase	NA
UHGV-0118804_30	eggNOG-mapper	665956.HMPREF1032_00133	phosphatase activity	NA
UHGV-0118804_30	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0118804_30	Structural annotation	TIGR01689, COG2179	NA	NA
UHGV-0118804_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0118804_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0118804_31	UniRef90	UniRef90_G9RV27	Methyltransferase	NA
UHGV-0118804_31	eggNOG-mapper	665956.HMPREF1032_00128	DNA methylase	NA
UHGV-0118804_31	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0118804_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0118804_31	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0118804_31	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0118804_32	PHROG	phrog_1558	NA	unknown function
UHGV-0118804_32	UniRef90	UniRef90_UPI00112044DB	helix-turn-helix domain-containing protein	NA
UHGV-0118804_32	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0118804_32	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0118804_32	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0118804_34	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118804_34	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-0118804_34	eggNOG-mapper	411468.CLOSCI_01486	NA	NA
UHGV-0118804_35	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0118804_35	UniRef90	UniRef90_B0NDF9	Phage terminase, small subunit, P27 family	NA
UHGV-0118804_35	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-0118804_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0118804_35	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0118804_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0118804_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0118804_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0118804_36	UniRef90	UniRef90_B0NDG0	Putative phage terminase, large subunit	NA
UHGV-0118804_36	eggNOG-mapper	411468.CLOSCI_01488	Phage Terminase	NA
UHGV-0118804_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0118804_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0118804_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118804_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0118804_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0118804_37	UniRef90	UniRef90_A0A3R6XLQ1	Phage portal protein	NA
UHGV-0118804_37	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0118804_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0118804_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0118804_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0118804_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0118804_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118804_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0118804_38	UniRef90	UniRef90_B0NDG2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0118804_38	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0118804_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118804_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118804_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0118804_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0118804_39	UniRef90	UniRef90_UPI0018AB7CA3	phage major capsid protein	NA
UHGV-0118804_39	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0118804_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118804_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118804_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0118804_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118804_40	UniRef90	UniRef90_A0A5S4VQ23	Phage gp6-like head-tail connector protein	NA
UHGV-0118804_40	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0118804_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0118804_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0118804_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0118804_42	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-0118804_42	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0118804_42	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0118804_42	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0118804_43	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0118804_43	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0118804_44	PHROG	phrog_88	major tail protein	tail
UHGV-0118804_44	UniRef90	UniRef90_A0A412Q217	Major tail protein	NA
UHGV-0118804_44	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-0118804_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0118804_44	COG	COG5492	NA	NA
UHGV-0118804_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0118804_45	PHROG	phrog_13494	NA	unknown function
UHGV-0118804_45	eggNOG-mapper	411459.RUMOBE_01727	NA	NA
UHGV-0118804_45	Structural annotation	PF20378	NA	NA
UHGV-0118804_46	PHROG	phrog_25901	NA	unknown function
UHGV-0118804_46	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0118804_46	Structural annotation	PF10109	NA	NA
UHGV-0118804_47	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0118804_47	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0118804_47	UniRef90	UniRef90_A0A371ARP8	Phage tail tape measure protein	NA
UHGV-0118804_47	eggNOG-mapper	668618.C8CH30_9CAUD	peptidoglycan catabolic process	NA
UHGV-0118804_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0118804_47	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0118804_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0118804_48	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0118804_48	eggNOG-mapper	1391647.AVSV01000039_gene1109	phage tail	NA
UHGV-0118804_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0118804_48	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0118804_49	PHROG	phrog_18110	NA	unknown function
UHGV-0118804_49	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0118804_49	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0118804_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0118804_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0118804_49	COG	COG4926	Phage-related protein	NA
UHGV-0118804_49	Structural annotation	PF14594, PF00629, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0118804_51	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0118804_51	PHROG	phrog_17147	NA	unknown function
UHGV-0118804_51	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0118804_51	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0118804_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0118804_51	Structural annotation	PF10651	NA	NA
UHGV-0118804_52	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0118804_52	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0118804_52	UniRef90	UniRef90_C4ZC80	Reverse transcriptase domain-containing protein	NA
UHGV-0118804_52	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0118804_52	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0118804_52	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0118804_52	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0118804_54	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0118804_54	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0118804_55	KOfam	K07273	acm; lysozyme	NA
UHGV-0118804_55	PHROG	phrog_291	endolysin	lysis
UHGV-0118804_55	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0118804_55	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0118804_55	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0118804_55	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0118804_55	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0118804_56	PHROG	phrog_199	holin	lysis
UHGV-0118804_56	UniRef90	UniRef90_UPI001D08D7FC	phage holin family protein	NA
UHGV-0118804_56	eggNOG-mapper	999413.HMPREF1094_01994	NA	NA
UHGV-0118804_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0118804_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0118804_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA