UHGV-0118818

Genome information

Genome length 55,854 bps

CDS count 73

Completeness 99.83% (high-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118818
vOTU ID	vOTU-075986
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285526
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.84
Jumbo phage	No

Genome content
Genome length	55,854 bps
GC content	49.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	93.50%
Average CDS length	718.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118818_1	eggNOG-mapper	591001.Acfer_1772	NA	NA
UHGV-0118818_2	eggNOG-mapper	1527519.A0A076G5M0_9CAUD	NA	NA
UHGV-0118818_3	PHROG	phrog_10797	NA	unknown function
UHGV-0118818_3	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-0118818_3	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-0118818_3	Structural annotation	PF06531	NA	NA
UHGV-0118818_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0118818_4	PHROG	phrog_6745	endolysin	lysis
UHGV-0118818_4	UniRef90	UniRef90_A0A0U1L0T6	Glycosyl hydrolase, family 25	NA
UHGV-0118818_4	eggNOG-mapper	1123288.SOV_2c03400	Glycosyl hydrolases family 25	NA
UHGV-0118818_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0118818_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0118818_4	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0118818_5	PHROG	phrog_10691	NA	unknown function
UHGV-0118818_5	UniRef90	UniRef90_UPI000413C241	transglycosylase SLT domain-containing protein	NA
UHGV-0118818_5	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0118818_5	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0118818_5	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0118818_5	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0118818_5	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0118818_5	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0118818_7	UniRef90	UniRef90_A0A1G6NNF8	Intein N-terminal splicing region	NA
UHGV-0118818_7	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0118818_7	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0118818_7	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0118818_9	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-0118818_10	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-0118818_10	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0118818_14	PHROG	phrog_19695	NA	unknown function
UHGV-0118818_14	Structural annotation	PF10651	NA	NA
UHGV-0118818_15	PHROG	phrog_33356	NA	unknown function
UHGV-0118818_15	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0118818_17	PHROG	phrog_32822	virion structural protein	head and packaging
UHGV-0118818_17	eggNOG-mapper	883156.HMPREF9282_00560	transmembrane signaling receptor activity	NA
UHGV-0118818_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0118818_17	Structural annotation	PF16389, PF19077, MF_04116, NF010681, COG3401	NA	NA
UHGV-0118818_18	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0118818_18	Structural annotation	PF20387	NA	NA
UHGV-0118818_19	Structural annotation	PF20387	NA	NA
UHGV-0118818_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0118818_21	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0118818_21	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0118818_21	Pfam	PF17236	NA	DUF5309
UHGV-0118818_21	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0118818_22	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0118818_23	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0118818_23	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0118818_23	eggNOG-mapper	1485543.JMME01000020_gene791	Membrane	NA
UHGV-0118818_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0118818_23	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0118818_24	Structural annotation	PF21621, MF_01255, NF009806, COG4766	NA	NA
UHGV-0118818_25	PHROG	phrog_5902	NA	unknown function
UHGV-0118818_25	UniRef90	UniRef90_A0A5D6WD94	Terminase	NA
UHGV-0118818_25	eggNOG-mapper	1485543.JMME01000020_gene792	Terminase RNaseH-like domain	NA
UHGV-0118818_25	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0118818_25	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0118818_26	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-0118818_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0118818_27	PHROG	phrog_31110	NA	unknown function
UHGV-0118818_33	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0118818_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118818_33	UniRef90	UniRef90_A0A7C6K8N3	Helix-turn-helix transcriptional regulator	NA
UHGV-0118818_33	eggNOG-mapper	546271.Selsp_0815	sequence-specific DNA binding	NA
UHGV-0118818_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118818_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0118818_33	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0118818_34	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0118818_34	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0118818_35	PHROG	phrog_1048	NA	unknown function
UHGV-0118818_35	UniRef90	UniRef90_UPI000881EF47	NA	NA
UHGV-0118818_35	eggNOG-mapper	1280692.AUJL01000027_gene2162	NA	NA
UHGV-0118818_35	Pfam	PF11195	NA	DUF2829
UHGV-0118818_35	Pfam	PF11753	NA	DUF3310
UHGV-0118818_35	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0118818_39	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0118818_39	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0118818_39	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0118818_39	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0118818_41	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0118818_41	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0118818_41	UniRef90	UniRef90_UPI00094EBE41	dUTP diphosphatase	NA
UHGV-0118818_41	eggNOG-mapper	879308.HMPREF9130_1978	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0118818_41	Pfam	PF00692	dUTPase	dUTPase
UHGV-0118818_41	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0118818_41	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0118818_41	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0118818_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118818_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118818_43	UniRef90	UniRef90_UPI00094EA76A	single-stranded DNA-binding protein	NA
UHGV-0118818_43	eggNOG-mapper	591001.Acfer_0039	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0118818_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118818_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118818_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118818_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118818_43	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0118818_44	PHROG	phrog_23660	NA	unknown function
UHGV-0118818_44	eggNOG-mapper	1158602.I590_02981	NA	NA
UHGV-0118818_45	PHROG	phrog_6721	NA	unknown function
UHGV-0118818_45	eggNOG-mapper	515620.EUBELI_00925	NA	NA
UHGV-0118818_45	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0118818_48	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118818_48	UniRef90	UniRef90_UPI000E5C7063	HNH endonuclease	NA
UHGV-0118818_48	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0118818_48	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0118818_48	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118818_48	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0118818_50	PHROG	phrog_7839	NA	unknown function
UHGV-0118818_50	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0118818_50	Structural annotation	PF08860	NA	NA
UHGV-0118818_55	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0118818_57	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0118818_57	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0118818_57	UniRef90	UniRef90_UPI0008DA4C04	DnaA/Hda family protein	NA
UHGV-0118818_57	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-0118818_57	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0118818_57	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-0118818_59	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0118818_59	UniRef90	UniRef90_UPI0008EB4872	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0118818_59	eggNOG-mapper	272562.CA_C1934	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0118818_59	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0118818_59	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0118818_59	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0118818_59	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0118818_60	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0118818_60	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0118818_60	UniRef90	UniRef90_UPI0013566F6B	recombinase RecT	NA
UHGV-0118818_60	eggNOG-mapper	1591072.A0A0B5CTU3_9CAUD	DNA metabolic process	NA
UHGV-0118818_60	Pfam	PF03837	RecT family	RecT
UHGV-0118818_60	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0118818_60	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0118818_61	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118818_61	UniRef90	UniRef90_E2ZAT3	YqaJ viral recombinase family protein	NA
UHGV-0118818_61	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0118818_61	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0118818_61	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0118818_61	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0118818_61	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0118818_68	UniRef90	UniRef90_UPI001412A513	helix-turn-helix transcriptional regulator	NA
UHGV-0118818_68	eggNOG-mapper	1123263.AUKY01000076_gene1780	NA	NA
UHGV-0118818_68	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0118818_68	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0118818_69	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0118818_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0118818_69	UniRef90	UniRef90_UPI001D08154B	helix-turn-helix transcriptional regulator	NA
UHGV-0118818_69	eggNOG-mapper	1235790.C805_01005	Helix-turn-helix domain protein	NA
UHGV-0118818_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0118818_69	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118818_69	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0118818_70	PHROG	phrog_87	metallo-protease	other
UHGV-0118818_70	UniRef90	UniRef90_A0A8D5A4J0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0118818_70	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-0118818_70	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0118818_70	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0118818_70	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0118818_72	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0118818_72	PHROG	phrog_95	integrase	integration and excision
UHGV-0118818_72	UniRef90	UniRef90_UPI000978E3CA	recombinase family protein	NA
UHGV-0118818_72	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-0118818_72	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0118818_72	Pfam	PF07508	Recombinase	Recombinase
UHGV-0118818_72	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0118818_72	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0118818_72	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA