UHGV-0118892

Genome information

Genome length 41,247 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0118892
vOTU ID	vOTU-005422
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_276915
BioSample	SAMEA3879592
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.55
Jumbo phage	No

Genome content
Genome length	41,247 bps
GC content	41.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.16%
Average CDS length	723.35 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0118892_1	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0118892_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0118892_1	UniRef90	UniRef90_A0A4S2AGB7	Phage tail tape measure protein (Fragment)	NA
UHGV-0118892_1	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-0118892_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0118892_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0118892_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0118892_1	Structural annotation	PF10145, PF05384, PF05055, TIGR01760	NA	NA
UHGV-0118892_3	Structural annotation	PF11836	NA	NA
UHGV-0118892_4	PHROG	phrog_88	major tail protein	tail
UHGV-0118892_4	UniRef90	UniRef90_A0A1C6IVD8	Phage major tail protein, phi13 family	NA
UHGV-0118892_4	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0118892_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0118892_4	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0118892_5	UniRef90	UniRef90_A0A3D4X921	Phage tail protein	NA
UHGV-0118892_5	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0118892_5	Structural annotation	PF05657	NA	NA
UHGV-0118892_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0118892_6	UniRef90	UniRef90_A0A1C6IVB7	Phage protein, HK97 gp10 family	NA
UHGV-0118892_6	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0118892_6	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0118892_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0118892_7	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0118892_7	eggNOG-mapper	1235792.C808_03061	NA	NA
UHGV-0118892_7	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0118892_8	PHROG	phrog_5223	neck protein	connector
UHGV-0118892_8	eggNOG-mapper	411459.RUMOBE_00934	NA	NA
UHGV-0118892_8	Structural annotation	TIGR01560	NA	NA
UHGV-0118892_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0118892_9	UniRef90	UniRef90_UPI001D08E8BE	phage major capsid protein	NA
UHGV-0118892_9	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0118892_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0118892_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0118892_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0118892_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0118892_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0118892_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0118892_10	UniRef90	UniRef90_A0A1C6IV57	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0118892_10	eggNOG-mapper	536232.CLM_1658	Belongs to the peptidase S14 family	NA
UHGV-0118892_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0118892_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0118892_10	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0118892_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0118892_11	UniRef90	UniRef90_A0A1C6IVH0	Phage portal protein, HK97 family	NA
UHGV-0118892_11	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0118892_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0118892_11	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0118892_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0118892_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0118892_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0118892_12	UniRef90	UniRef90_A0A1C6IVJ8	Phage terminase-like protein, large subunit	NA
UHGV-0118892_12	eggNOG-mapper	411459.RUMOBE_00938	NA	NA
UHGV-0118892_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0118892_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0118892_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0118892_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0118892_13	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0118892_13	UniRef90	UniRef90_A0A1C6IV70	Phage terminase, small subunit	NA
UHGV-0118892_13	eggNOG-mapper	411459.RUMOBE_00939	Phage terminase, small subunit	NA
UHGV-0118892_13	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0118892_13	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0118892_13	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0118892_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0118892_14	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0118892_14	UniRef90	UniRef90_A0A1C6IUY5	HNH domain-containing protein	NA
UHGV-0118892_14	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0118892_14	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0118892_14	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0118892_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0118892_15	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-0118892_15	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0118892_15	Pfam	PF07374	NA	DUF1492
UHGV-0118892_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0118892_15	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0118892_16	PHROG	phrog_19011	NA	unknown function
UHGV-0118892_16	Structural annotation	PF17516, COG4466	NA	NA
UHGV-0118892_19	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0118892_22	PHROG	phrog_7566	NA	unknown function
UHGV-0118892_22	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0118892_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0118892_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0118892_23	UniRef90	UniRef90_A0A1C6IVA5	Single-stranded DNA-binding protein	NA
UHGV-0118892_23	eggNOG-mapper	411459.RUMOBE_00993	NA	NA
UHGV-0118892_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0118892_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0118892_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0118892_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0118892_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0118892_24	PHROG	phrog_31560	NA	unknown function
UHGV-0118892_24	eggNOG-mapper	796945.HMPREF1145_2028	NA	NA
UHGV-0118892_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0118892_28	PHROG	phrog_15077	NA	unknown function
UHGV-0118892_28	UniRef90	UniRef90_UPI0018AA1051	ParB/RepB/Spo0J family partition protein	NA
UHGV-0118892_28	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0118892_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0118892_28	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0118892_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0118892_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0118892_29	UniRef90	UniRef90_UPI001C00DAF9	ParA family protein	NA
UHGV-0118892_29	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0118892_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0118892_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0118892_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0118892_31	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0118892_31	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0118892_31	Pfam	PF00075	RNase H	RNase_H
UHGV-0118892_31	COG	COG0328	Ribonuclease HI	NA
UHGV-0118892_31	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0118892_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0118892_32	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0118892_32	Structural annotation	PF01446	NA	NA
UHGV-0118892_33	PHROG	phrog_6058	NA	unknown function
UHGV-0118892_33	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0118892_33	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0118892_38	UniRef90	UniRef90_A0A1C6KA21	HTH cro/C1-type domain-containing protein	NA
UHGV-0118892_38	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0118892_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0118892_38	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0118892_40	PHROG	phrog_15412	NA	unknown function
UHGV-0118892_40	UniRef90	UniRef90_A0A416SJX2	YbjQ family protein	NA
UHGV-0118892_40	eggNOG-mapper	658659.HMPREF0983_03993	Putative heavy-metal-binding	NA
UHGV-0118892_40	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0118892_40	COG	COG0393	NA	NA
UHGV-0118892_40	HAMAP	MF_00338	UPF0145 protein YbjQ [ybjQ]	NA
UHGV-0118892_41	KOfam	K14059	int; integrase	NA
UHGV-0118892_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0118892_41	UniRef90	UniRef90_A0A1C6H8L7	Site-specific tyrosine recombinase XerD	NA
UHGV-0118892_41	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0118892_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118892_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0118892_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0118892_42	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0118892_42	PHROG	phrog_3088	amidase	lysis
UHGV-0118892_42	UniRef90	UniRef90_A0A1C6BCE6	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0118892_42	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0118892_42	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0118892_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0118892_42	Pfam	PF05036	SPOR domain	SPOR
UHGV-0118892_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0118892_42	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0118892_43	PHROG	phrog_199	holin	lysis
UHGV-0118892_43	UniRef90	UniRef90_A0A417CRV5	Holin	NA
UHGV-0118892_43	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0118892_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0118892_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0118892_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0118892_44	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0118892_44	UniRef90	UniRef90_UPI00165545C1	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA
UHGV-0118892_44	eggNOG-mapper	325777.GW15_0221295	Bacterial shufflon protein, N-terminal constant region	NA
UHGV-0118892_44	Pfam	PF04917	Bacterial shufflon protein, N-terminal constant region	Shufflon_N
UHGV-0118892_44	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0118892_44	COG	COG2165	Type II secretory pathway, pseudopilin PulG	NA
UHGV-0118892_46	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0118892_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0118892_46	UniRef90	UniRef90_A0A1C5YVZ3	Tyrosine recombinase XerD	NA
UHGV-0118892_46	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0118892_46	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0118892_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0118892_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0118892_46	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0118892_47	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0118892_48	PHROG	phrog_18110	NA	unknown function
UHGV-0118892_48	UniRef90	UniRef90_UPI001D06F077	phage tail protein	NA
UHGV-0118892_48	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0118892_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0118892_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0118892_48	COG	COG4926	Phage-related protein	NA
UHGV-0118892_48	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0118892_49	Structural annotation	PF07761	NA	NA
UHGV-0118892_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0118892_50	UniRef90	UniRef90_UPI001654ECC4	phage tail family protein	NA
UHGV-0118892_50	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0118892_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0118892_50	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0118892_51	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0118892_51	UniRef90	UniRef90_UPI0016556A77	phage tail tape measure protein	NA
UHGV-0118892_51	eggNOG-mapper	1033738.CAEP01000018_gene3682	Phage tail tape measure protein, TP901 family	NA
UHGV-0118892_51	COG	COG5280	Phage-related minor tail protein	NA