UHGV-0119001

Genome information

Genome length 64,464 bps

CDS count 71

Completeness 95.02% (high-quality)

geNomad score 0.9643

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119001
vOTU ID	vOTU-064667
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_309272
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9643
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.24
Jumbo phage	No

Genome content
Genome length	64,464 bps
GC content	38.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	93.12%
Average CDS length	849.13 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119001_1	UniRef90	UniRef90_A0A2T2VE77	ATP-binding protein (Fragment)	NA
UHGV-0119001_1	eggNOG-mapper	484018.BACPLE_03432	NA	NA
UHGV-0119001_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0119001_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0119001_2	UniRef90	UniRef90_A0A1M6WRM4	Restriction endonuclease	NA
UHGV-0119001_2	Structural annotation	PF13156, MF_00722, NF002876, COG1787	NA	NA
UHGV-0119001_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0119001_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0119001_3	UniRef90	UniRef90_A0A3E4N394	Helix-turn-helix domain-containing protein	NA
UHGV-0119001_3	eggNOG-mapper	1268240.ATFI01000007_gene448	Peptidase S24-like	NA
UHGV-0119001_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0119001_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0119001_3	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0119001_6	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0119001_9	PHROG	phrog_37809	NA	unknown function
UHGV-0119001_9	eggNOG-mapper	1236514.BAKL01000015_gene1654	NA	NA
UHGV-0119001_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0119001_11	UniRef90	UniRef90_UPI001921A92D	recombinase RecT	NA
UHGV-0119001_11	eggNOG-mapper	563031.HMPREF0666_01115	RecT family	NA
UHGV-0119001_11	Pfam	PF03837	RecT family	RecT
UHGV-0119001_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0119001_11	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0119001_12	eggNOG-mapper	484018.BACPLE_02411	NA	NA
UHGV-0119001_13	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0119001_13	UniRef90	UniRef90_UPI00076095A9	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0119001_13	eggNOG-mapper	1121097.JCM15093_2720	NA	NA
UHGV-0119001_13	Structural annotation	PF06023, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0119001_14	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0119001_14	UniRef90	UniRef90_UPI00076034E7	NA	NA
UHGV-0119001_14	eggNOG-mapper	1046714.AMRX01000006_gene3162	NA	NA
UHGV-0119001_14	Pfam	PF07105	NA	DUF1367
UHGV-0119001_14	Structural annotation	PF07105	NA	NA
UHGV-0119001_15	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0119001_15	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0119001_15	UniRef90	UniRef90_UPI00192104D4	DEAD/DEAH box helicase	NA
UHGV-0119001_15	eggNOG-mapper	563031.HMPREF0666_01118	SNF2 family N-terminal domain	NA
UHGV-0119001_15	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0119001_15	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0119001_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0119001_15	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0119001_15	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0119001_16	UniRef90	UniRef90_A0A412BMF2	HNHc domain-containing protein	NA
UHGV-0119001_16	eggNOG-mapper	1347393.HG726022_gene3599	HNH nucleases	NA
UHGV-0119001_16	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0119001_17	UniRef90	UniRef90_UPI000E4D0410	Nmad5 family putative nucleotide modification protein	NA
UHGV-0119001_17	Pfam	PF18757	Nucleotide modification associated domain 5	Nmad5
UHGV-0119001_17	Structural annotation	PF18757	NA	NA
UHGV-0119001_18	PHROG	phrog_35807	NA	unknown function
UHGV-0119001_18	UniRef90	UniRef90_A0A3E4KJL2	RNA polymerase subunit sigma	NA
UHGV-0119001_18	eggNOG-mapper	357276.EL88_11505	RNA polymerase activity	NA
UHGV-0119001_18	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-0119001_18	Structural annotation	PF14902	NA	NA
UHGV-0119001_19	PHROG	phrog_824	NA	unknown function
UHGV-0119001_19	UniRef90	UniRef90_UPI0019568853	VRR-NUC domain-containing protein	NA
UHGV-0119001_19	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-0119001_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0119001_20	PHROG	phrog_19415	NA	unknown function
UHGV-0119001_20	eggNOG-mapper	694427.Palpr_2953	NA	NA
UHGV-0119001_20	Pfam	PF19808	NA	DUF6291
UHGV-0119001_20	Structural annotation	PF19808	NA	NA
UHGV-0119001_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0119001_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0119001_21	UniRef90	UniRef90_A0A679HI48	AAA_5 domain-containing protein	NA
UHGV-0119001_21	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-0119001_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0119001_21	Structural annotation	PF00308, MF_01919, NF005931, COG1484	NA	NA
UHGV-0119001_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0119001_24	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0119001_24	UniRef90	UniRef90_A0A6N3EY17	Methyltransferase	NA
UHGV-0119001_24	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0119001_24	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0119001_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0119001_24	COG	COG0863	DNA modification methylase	NA
UHGV-0119001_24	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0119001_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0119001_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0119001_26	UniRef90	UniRef90_A0A412HAT5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0119001_26	eggNOG-mapper	1122971.BAME01000058_gene4475	C-5 cytosine-specific DNA methylase	NA
UHGV-0119001_26	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0119001_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0119001_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0119001_26	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0119001_28	PHROG	phrog_22725	NA	unknown function
UHGV-0119001_28	eggNOG-mapper	397290.C810_01475	NA	NA
UHGV-0119001_29	PHROG	phrog_32914	NA	unknown function
UHGV-0119001_32	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0119001_32	UniRef90	UniRef90_UPI001F25A0ED	class I SAM-dependent methyltransferase	NA
UHGV-0119001_32	eggNOG-mapper	619693.HMPREF6745_2501	Methyltransferase domain	NA
UHGV-0119001_32	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0119001_32	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0119001_32	COG	COG1041	tRNA G10 N-methylase Trm11	NA
UHGV-0119001_32	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0119001_36	UniRef90	UniRef90_UPI00189E1927	NA	NA
UHGV-0119001_36	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0119001_36	Pfam	PF04448	NA	DUF551
UHGV-0119001_37	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0119001_39	PHROG	phrog_874	NA	unknown function
UHGV-0119001_39	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0119001_39	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0119001_40	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0119001_40	UniRef90	UniRef90_A0A8F0WAW6	NA	NA
UHGV-0119001_40	eggNOG-mapper	943335.F4N9T4_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0119001_40	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0119001_41	PHROG	phrog_32516	NA	unknown function
UHGV-0119001_41	eggNOG-mapper	742817.HMPREF9449_01799	NA	NA
UHGV-0119001_41	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0119001_42	KOfam	K07493	K07493; putative transposase	NA
UHGV-0119001_42	PHROG	phrog_2331	transposase	integration and excision
UHGV-0119001_42	UniRef90	UniRef90_A0A1E9B5R5	Mutator family transposase	NA
UHGV-0119001_42	eggNOG-mapper	657309.BXY_33870	COG3328 Transposase and inactivated derivatives	NA
UHGV-0119001_42	Pfam	PF00872	Transposase, Mutator family	Transposase_mut
UHGV-0119001_42	NCBIFam	NF033543.1	IS256 family transposase	NA
UHGV-0119001_42	COG	COG3328	Transposase (or an inactivated derivative)	NA
UHGV-0119001_42	Structural annotation	PF00872, NF033543, COG3328	NA	NA
UHGV-0119001_45	eggNOG-mapper	1347393.HG726022_gene3589	NA	NA
UHGV-0119001_48	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0119001_48	PHROG	phrog_822	amidase	lysis
UHGV-0119001_48	UniRef90	UniRef90_A0A1Y4K306	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119001_48	eggNOG-mapper	679191.HMPREF9018_0443	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119001_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0119001_48	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0119001_48	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0119001_49	UniRef90	UniRef90_UPI0018A03895	phage holin family protein	NA
UHGV-0119001_49	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0119001_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0119001_49	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0119001_53	Structural annotation	PF20617	NA	NA
UHGV-0119001_55	Structural annotation	NF033190, COG4886	NA	NA
UHGV-0119001_56	PHROG	phrog_18498	NA	unknown function
UHGV-0119001_56	UniRef90	UniRef90_A0A0Q4DFV9	PKD domain-containing protein	NA
UHGV-0119001_56	eggNOG-mapper	35754.JNYJ01000024_gene9220	Belongs to the glycosyl hydrolase 30 family	NA
UHGV-0119001_56	COG	COG5520	O-Glycosyl hydrolase	NA
UHGV-0119001_58	Structural annotation	PF11456, PF00686, COG5456, COG2372	NA	NA
UHGV-0119001_59	PHROG	phrog_22135	NA	unknown function
UHGV-0119001_59	eggNOG-mapper	1347393.HG726020_gene1827	NA	NA
UHGV-0119001_61	PHROG	phrog_26635	NA	unknown function
UHGV-0119001_61	UniRef90	UniRef90_UPI0013D12615	NA	NA
UHGV-0119001_61	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0119001_61	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0119001_62	PHROG	phrog_22323	NA	unknown function
UHGV-0119001_62	eggNOG-mapper	742817.HMPREF9449_01784	NA	NA
UHGV-0119001_63	eggNOG-mapper	742726.HMPREF9448_00598	NA	NA
UHGV-0119001_64	UniRef90	UniRef90_R5V7N0	Rhomboid domain-containing protein	NA
UHGV-0119001_64	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0119001_64	COG	COG0705	Membrane-associated serine protease, rhomboid family	NA
UHGV-0119001_65	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0119001_65	UniRef90	UniRef90_A0A2V2D167	Terminase	NA
UHGV-0119001_65	eggNOG-mapper	1349822.NSB1T_06540	Terminase	NA
UHGV-0119001_65	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119001_65	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119001_66	PHROG	phrog_156	portal protein	head and packaging
UHGV-0119001_66	eggNOG-mapper	1349822.NSB1T_06480	NA	NA
UHGV-0119001_66	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119001_67	PHROG	phrog_14770	NA	unknown function
UHGV-0119001_67	UniRef90	UniRef90_A0A3R6KNJ5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0119001_67	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0119001_67	Pfam	PF18827	Large polyvalent protein-associated domain 14	LPD14
UHGV-0119001_67	Pfam	PF18762	Serine/Threonine/Tyrosine Kinase found in polyvalent proteins	Kinase-PolyVal
UHGV-0119001_67	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0119001_67	Pfam	PF18796	Large polyvalent protein-associated domain 1	LPD1
UHGV-0119001_67	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0119001_67	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0119001_67	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0119001_69	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0119001_71	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0119001_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0119001_71	UniRef90	UniRef90_R5V738	Core-binding (CB) domain-containing protein	NA
UHGV-0119001_71	eggNOG-mapper	411901.BACCAC_01099	Belongs to the 'phage' integrase family	NA
UHGV-0119001_71	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0119001_71	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0119001_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119001_71	Structural annotation	PF00589, PF17293, MF_01808, TIGR02224, COG4973	NA	NA