UHGV-0119026

Genome information

Genome length 32,966 bps

CDS count 49

Completeness 93.70% (high-quality)

geNomad score 0.9683

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119026
vOTU ID	vOTU-074800
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286686
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9683
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.49
Jumbo phage	No

Genome content
Genome length	32,966 bps
GC content	39.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.97%
Average CDS length	614.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119026_2	UniRef90	UniRef90_A0A374MZ40	XRE family transcriptional regulator	NA
UHGV-0119026_2	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0119026_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119026_2	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0119026_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0119026_3	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0119026_3	UniRef90	UniRef90_A0A412UM21	Methyltransferase	NA
UHGV-0119026_3	eggNOG-mapper	1226322.HMPREF1545_02860	NA	NA
UHGV-0119026_3	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0119026_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0119026_3	COG	COG0863	DNA modification methylase	NA
UHGV-0119026_3	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0119026_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0119026_4	PHROG	phrog_20388	endolysin	lysis
UHGV-0119026_4	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119026_4	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119026_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0119026_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0119026_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119026_4	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0119026_5	PHROG	phrog_199	holin	lysis
UHGV-0119026_5	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0119026_5	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0119026_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0119026_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0119026_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0119026_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0119026_7	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0119026_7	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0119026_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0119026_8	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0119026_8	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0119026_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0119026_8	COG	COG1511	NA	NA
UHGV-0119026_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0119026_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0119026_9	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0119026_9	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0119026_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0119026_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0119026_10	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0119026_10	PHROG	phrog_5218	NA	unknown function
UHGV-0119026_10	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0119026_10	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0119026_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0119026_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0119026_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0119026_11	Structural annotation	PF11836	NA	NA
UHGV-0119026_12	PHROG	phrog_88	major tail protein	tail
UHGV-0119026_12	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0119026_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0119026_12	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0119026_13	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0119026_13	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0119026_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0119026_13	Structural annotation	TIGR01725	NA	NA
UHGV-0119026_14	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0119026_15	PHROG	phrog_19734	NA	unknown function
UHGV-0119026_15	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0119026_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0119026_16	PHROG	phrog_749	NA	unknown function
UHGV-0119026_16	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0119026_16	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0119026_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0119026_17	UniRef90	UniRef90_UPI000E4BAA71	phage major capsid protein	NA
UHGV-0119026_17	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0119026_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0119026_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0119026_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0119026_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0119026_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0119026_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0119026_18	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0119026_18	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0119026_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0119026_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0119026_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0119026_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119026_19	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0119026_19	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0119026_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119026_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0119026_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119026_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119026_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119026_20	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0119026_20	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0119026_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0119026_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119026_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119026_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119026_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0119026_21	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0119026_21	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0119026_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0119026_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119026_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119026_22	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0119026_22	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0119026_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0119026_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119026_23	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0119026_23	Structural annotation	TIGR01636	NA	NA
UHGV-0119026_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119026_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0119026_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0119026_28	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0119026_28	Structural annotation	PF15597	NA	NA
UHGV-0119026_29	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119026_29	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0119026_29	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0119026_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0119026_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119026_29	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0119026_31	PHROG	phrog_824	NA	unknown function
UHGV-0119026_31	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0119026_31	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0119026_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0119026_31	Structural annotation	PF08774	NA	NA
UHGV-0119026_32	PHROG	phrog_24518	NA	unknown function
UHGV-0119026_32	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0119026_33	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0119026_33	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0119026_33	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0119026_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0119026_34	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0119026_34	UniRef90	UniRef90_A0A3D1WJI5	Chromosome partitioning protein ParB (Fragment)	NA
UHGV-0119026_34	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0119026_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0119026_34	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0119026_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0119026_34	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0119026_36	Structural annotation	COG1862	NA	NA
UHGV-0119026_37	PHROG	phrog_6058	NA	unknown function
UHGV-0119026_37	Structural annotation	NF033787	NA	NA
UHGV-0119026_38	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0119026_38	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0119026_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0119026_38	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0119026_39	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0119026_39	Structural annotation	PF15597	NA	NA
UHGV-0119026_40	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0119026_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0119026_40	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0119026_40	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0119026_40	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0119026_40	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0119026_40	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0119026_40	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0119026_42	PHROG	phrog_585	NA	unknown function
UHGV-0119026_42	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0119026_42	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0119026_42	Pfam	PF10711	NA	DUF2513
UHGV-0119026_42	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0119026_44	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0119026_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119026_44	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0119026_45	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0119026_45	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119026_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119026_45	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0119026_46	PHROG	phrog_1914	NA	unknown function
UHGV-0119026_46	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0119026_46	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0119026_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0119026_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0119026_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0119026_47	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0119026_47	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0119026_47	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0119026_48	KOfam	K14059	int; integrase	NA
UHGV-0119026_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0119026_48	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0119026_48	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0119026_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119026_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0119026_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0119026_49	eggNOG-mapper	1321372.AQQB01000002_gene484	NA	NA