UHGV-0119091

Genome information

Genome length 19,259 bps

CDS count 28

Completeness 63.57% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119091
vOTU ID	vOTU-042389
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_281468
BioSample	SAMEA3888916
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.57
Jumbo phage	No

Genome content
Genome length	19,259 bps
GC content	58.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	84.18%
Average CDS length	582.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119091_2	PHROG	phrog_16951	NA	unknown function
UHGV-0119091_2	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0119091_2	eggNOG-mapper	1378168.N510_00640	NA	NA
UHGV-0119091_2	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0119091_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119091_3	UniRef90	UniRef90_A0A1Y3SK49	Phage portal protein	NA
UHGV-0119091_3	eggNOG-mapper	663278.Ethha_1836	Phage portal protein, HK97 family	NA
UHGV-0119091_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119091_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0119091_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119091_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119091_4	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0119091_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119091_5	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0119091_5	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0119091_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0119091_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119091_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119091_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0119091_6	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0119091_6	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-0119091_6	eggNOG-mapper	1501230.ET33_21205	Phage terminase, small subunit	NA
UHGV-0119091_6	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0119091_6	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0119091_6	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119091_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119091_7	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0119091_7	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0119091_10	PHROG	phrog_38832	NA	unknown function
UHGV-0119091_11	PHROG	phrog_7704	NA	unknown function
UHGV-0119091_11	UniRef90	UniRef90_A0A1M7SMP6	NA	NA
UHGV-0119091_11	Pfam	PF04448	NA	DUF551
UHGV-0119091_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0119091_11	Structural annotation	NF041588	NA	NA
UHGV-0119091_13	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0119091_13	PHROG	phrog_27290	NA	unknown function
UHGV-0119091_13	UniRef90	UniRef90_UPI000F6412EB	ParB/RepB/Spo0J family partition protein	NA
UHGV-0119091_13	eggNOG-mapper	1196322.A370_05736	Belongs to the ParB family	NA
UHGV-0119091_13	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0119091_13	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0119091_13	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0119091_13	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0119091_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0119091_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0119091_14	UniRef90	UniRef90_A0A3D1VAU9	ParA family protein	NA
UHGV-0119091_14	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0119091_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0119091_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0119091_14	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0119091_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0119091_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0119091_15	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0119091_15	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0119091_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0119091_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0119091_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0119091_15	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0119091_16	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119091_16	UniRef90	UniRef90_UPI001369664B	helix-turn-helix domain-containing protein	NA
UHGV-0119091_16	eggNOG-mapper	508419.F8J194_9CAUD	Helix-turn-helix domain	NA
UHGV-0119091_16	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0119091_16	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0119091_18	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0119091_18	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0119091_18	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0119091_19	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0119091_19	UniRef90	UniRef90_A0A4R4CYU2	Transcriptional regulator	NA
UHGV-0119091_19	eggNOG-mapper	1121342.AUCO01000012_gene1734	sequence-specific DNA binding	NA
UHGV-0119091_19	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0119091_19	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0119091_21	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0119091_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119091_22	UniRef90	UniRef90_A0A3A6JSY4	XRE family transcriptional regulator	NA
UHGV-0119091_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119091_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119091_24	PHROG	phrog_33519	NA	unknown function
UHGV-0119091_24	eggNOG-mapper	1507.HMPREF0262_01197	NA	NA
UHGV-0119091_24	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-0119091_25	KOfam	K14059	int; integrase	NA
UHGV-0119091_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0119091_25	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0119091_25	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0119091_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119091_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119091_25	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0119091_27	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0119091_28	UniRef90	UniRef90_A0A2V2C9H5	SLH domain-containing protein	NA
UHGV-0119091_28	eggNOG-mapper	1297617.JPJD01000029_gene2329	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0119091_28	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA