UHGV-0119141

Genome information

Genome length 30,921 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119141
vOTU ID	vOTU-013082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_293944
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.75
Jumbo phage	No

Genome content
Genome length	30,921 bps
GC content	42.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	88.58%
Average CDS length	575.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119141_1	KOfam	K14059	int; integrase	NA
UHGV-0119141_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0119141_1	UniRef90	UniRef90_D9R5C3	Integrase family protein	NA
UHGV-0119141_1	eggNOG-mapper	742740.HMPREF9474_04330	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0119141_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0119141_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119141_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119141_1	Structural annotation	PF00589, MF_01808, TIGR02225, NF041908, COG4974, COG3422	NA	NA
UHGV-0119141_2	UniRef90	UniRef90_UPI001D073EE1	OB-fold putative lipoprotein	NA
UHGV-0119141_2	eggNOG-mapper	742740.HMPREF9474_04329	NA	NA
UHGV-0119141_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0119141_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119141_4	UniRef90	UniRef90_E7GTT3	XRE family Transcriptional regulator	NA
UHGV-0119141_4	eggNOG-mapper	742740.HMPREF9474_04328	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119141_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119141_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119141_4	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0119141_6	UniRef90	UniRef90_E7GTT1	HTH_17 domain-containing protein	NA
UHGV-0119141_6	eggNOG-mapper	742740.HMPREF9474_04326	NA	NA
UHGV-0119141_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0119141_6	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0119141_6	Structural annotation	PF21531, TIGR01764, COG3311	NA	NA
UHGV-0119141_7	UniRef90	UniRef90_W1I5S0	Uncultured bacterium plasmid pRGI00460	NA
UHGV-0119141_8	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119141_8	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0119141_8	Structural annotation	PF11726	NA	NA
UHGV-0119141_11	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0119141_11	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0119141_11	UniRef90	UniRef90_E7GTS5	RNase H type-1 domain-containing protein	NA
UHGV-0119141_11	eggNOG-mapper	742740.HMPREF9474_04320	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0119141_11	Pfam	PF00075	RNase H	RNase_H
UHGV-0119141_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0119141_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0119141_12	PHROG	phrog_7566	NA	unknown function
UHGV-0119141_12	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-0119141_14	UniRef90	UniRef90_A0A894KBW2	LexA_DNA_bind domain-containing protein	NA
UHGV-0119141_14	eggNOG-mapper	742723.HMPREF9477_00922	NA	NA
UHGV-0119141_15	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0119141_15	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0119141_15	UniRef90	UniRef90_A0A413JGL2	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0119141_15	eggNOG-mapper	742740.HMPREF9474_00080	toxin-antitoxin pair type II binding	NA
UHGV-0119141_15	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0119141_17	PHROG	phrog_24368	NA	unknown function
UHGV-0119141_17	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0119141_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0119141_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0119141_18	UniRef90	UniRef90_A0A6N3HKR6	Tyrosine recombinase XerC	NA
UHGV-0119141_18	eggNOG-mapper	742740.HMPREF9474_04312	Belongs to the 'phage' integrase family	NA
UHGV-0119141_18	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0119141_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119141_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0119141_18	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0119141_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119141_19	UniRef90	UniRef90_A0A3R6NEA8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0119141_19	eggNOG-mapper	742740.HMPREF9474_04310	NA	NA
UHGV-0119141_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119141_20	UniRef90	UniRef90_UPI001899B9AE	HNH endonuclease	NA
UHGV-0119141_20	eggNOG-mapper	742740.HMPREF9474_04309	HNH endonuclease	NA
UHGV-0119141_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0119141_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119141_21	PHROG	phrog_1066	NA	unknown function
UHGV-0119141_21	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0119141_21	eggNOG-mapper	742740.HMPREF9474_04308	NA	NA
UHGV-0119141_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119141_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119141_22	UniRef90	UniRef90_UPI00073E3369	terminase large subunit	NA
UHGV-0119141_22	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0119141_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0119141_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119141_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119141_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119141_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119141_23	UniRef90	UniRef90_D1PNC9	Putative phage portal protein, HK97 family	NA
UHGV-0119141_23	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0119141_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119141_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119141_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119141_24	KOfam	K06904	NA	NA
UHGV-0119141_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0119141_24	UniRef90	UniRef90_E7GTR0	Caudovirus prohead protease	NA
UHGV-0119141_24	eggNOG-mapper	742740.HMPREF9474_04305	Phage prohead protease, HK97 family	NA
UHGV-0119141_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0119141_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0119141_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0119141_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0119141_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0119141_25	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0119141_25	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0119141_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0119141_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0119141_25	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0119141_26	PHROG	phrog_5223	neck protein	connector
UHGV-0119141_26	UniRef90	UniRef90_UPI0011832E85	head-tail connector protein	NA
UHGV-0119141_26	eggNOG-mapper	742740.HMPREF9474_04303	NA	NA
UHGV-0119141_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0119141_26	Structural annotation	TIGR01560	NA	NA
UHGV-0119141_27	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0119141_27	UniRef90	UniRef90_A0A2C5GPS3	Phage head-tail adapter protein	NA
UHGV-0119141_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0119141_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0119141_28	Structural annotation	TIGR01725	NA	NA
UHGV-0119141_29	Structural annotation	PF06141	NA	NA
UHGV-0119141_30	PHROG	phrog_88	major tail protein	tail
UHGV-0119141_30	UniRef90	UniRef90_UPI001D1188C4	phage tail protein	NA
UHGV-0119141_30	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0119141_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0119141_30	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0119141_33	PHROG	phrog_33680	NA	unknown function
UHGV-0119141_33	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0119141_33	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0119141_33	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0119141_33	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0119141_34	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0119141_34	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0119141_34	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0119141_34	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0119141_35	PHROG	phrog_26795	NA	unknown function
UHGV-0119141_35	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0119141_35	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0119141_36	PHROG	phrog_12764	NA	unknown function
UHGV-0119141_36	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0119141_37	PHROG	phrog_3639	minor tail protein	tail
UHGV-0119141_37	UniRef90	UniRef90_E7GTP7	BppU_N domain-containing protein	NA
UHGV-0119141_37	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0119141_37	Structural annotation	PF10651	NA	NA
UHGV-0119141_38	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0119141_39	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0119141_39	Structural annotation	NF040910	NA	NA
UHGV-0119141_40	PHROG	phrog_1863	NA	unknown function
UHGV-0119141_40	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0119141_40	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0119141_41	PHROG	phrog_1129	holin	lysis
UHGV-0119141_41	UniRef90	UniRef90_A0A2N0KEV2	Enolase	NA
UHGV-0119141_41	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0119141_41	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0119141_41	Structural annotation	PF06946	NA	NA
UHGV-0119141_42	PHROG	phrog_38078	NA	unknown function
UHGV-0119141_42	UniRef90	UniRef90_E7GTP4	Lysozyme	NA
UHGV-0119141_42	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0119141_42	Pfam	PF05257	CHAP domain	CHAP
UHGV-0119141_42	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0119141_42	Structural annotation	PF13457, TIGR02594, NF033202, COG0791	NA	NA
UHGV-0119141_43	KOfam	K19118	csd2, cas7; CRISPR-associated protein Csd2	NA
UHGV-0119141_43	UniRef90	UniRef90_E7GTP3	Csd2 family CRISPR-associated protein	NA
UHGV-0119141_43	eggNOG-mapper	742740.HMPREF9474_04288	NA	NA
UHGV-0119141_43	PADLOC	cas_Csd2	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
UHGV-0119141_43	Pfam	PF05107	CRISPR-associated protein Cas7	Cas_Cas7
UHGV-0119141_43	NCBIFam	TIGR02589.1	type I-C CRISPR-associated protein Cas7/Csd2	NA
UHGV-0119141_43	COG	COG3649	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0119141_43	Structural annotation	PF05107, TIGR02589, COG3649	NA	NA
UHGV-0119141_44	PHROG	phrog_25567	NA	unknown function
UHGV-0119141_44	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0119141_44	AcrCatalog	cluster_37554	NA	NA
UHGV-0119141_45	AcrCatalog	cluster_29073	NA	NA
UHGV-0119141_47	PHROG	phrog_1281	NA	unknown function
UHGV-0119141_47	UniRef90	UniRef90_UPI0005D1A37C	NA	NA
UHGV-0119141_47	eggNOG-mapper	936375.HMPREF1152_1710	NA	NA
UHGV-0119141_47	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0119141_47	COG	COG3600	NA	NA
UHGV-0119141_47	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0119141_48	PHROG	phrog_5763	NA	unknown function
UHGV-0119141_48	eggNOG-mapper	742740.HMPREF9474_04284	NA	NA