UHGV-0119165

Genome information

Genome length 36,825 bps

CDS count 59

Completeness 96.85% (high-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119165
vOTU ID	vOTU-010711
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_286001
BioSample	SAMEA4378293
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.27
Jumbo phage	No

Genome content
Genome length	36,825 bps
GC content	57.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.96%
Average CDS length	589.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119165_1	KOfam	K14059	int; integrase	NA
UHGV-0119165_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0119165_1	UniRef90	UniRef90_UPI000496F64A	tyrosine-type recombinase/integrase	NA
UHGV-0119165_1	eggNOG-mapper	1121440.AUMA01000008_gene873	Belongs to the 'phage' integrase family	NA
UHGV-0119165_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119165_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119165_1	Structural annotation	PF00589, PF13495, PF02920, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0119165_5	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-0119165_5	UniRef90	UniRef90_A0A3P1ZV66	Recombination-associated protein RdgC	NA
UHGV-0119165_5	eggNOG-mapper	525146.Ddes_1212	Putative exonuclease, RdgC	NA
UHGV-0119165_5	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-0119165_5	Structural annotation	PF04381, MF_00194, NF001465, COG2974	NA	NA
UHGV-0119165_8	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0119165_8	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0119165_8	UniRef90	UniRef90_A0A1K1LD52	Recombinational DNA repair protein RecT (Prophage associated)	NA
UHGV-0119165_8	eggNOG-mapper	644968.DFW101_3566	RecT family	NA
UHGV-0119165_8	Pfam	PF03837	RecT family	RecT
UHGV-0119165_8	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0119165_8	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0119165_8	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0119165_9	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0119165_9	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0119165_9	UniRef90	UniRef90_A0A1K1LD38	Exodeoxyribonuclease VIII	NA
UHGV-0119165_9	eggNOG-mapper	105422.BBPM01000058_gene4597	NA	NA
UHGV-0119165_9	Pfam	PF12684	NA	DUF3799
UHGV-0119165_9	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0119165_9	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0119165_13	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0119165_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0119165_13	UniRef90	UniRef90_A0A4Q0MVQ8	Peptidase_S24 domain-containing protein	NA
UHGV-0119165_13	eggNOG-mapper	1121447.JONL01000002_gene2189	CI repressor	NA
UHGV-0119165_13	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0119165_13	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0119165_13	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0119165_14	UniRef90	UniRef90_A0A7J0BX55	Transcriptional regulator	NA
UHGV-0119165_14	eggNOG-mapper	1121441.AUCX01000014_gene528	protein conserved in bacteria, prophage-related	NA
UHGV-0119165_14	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0119165_15	eggNOG-mapper	1408428.JNJP01000025_gene276	NA	NA
UHGV-0119165_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0119165_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0119165_16	UniRef90	UniRef90_A0A059WFK9	IstB-like ATP binding protein	NA
UHGV-0119165_16	eggNOG-mapper	1476902.A0A067ZJ24_9CAUD	IstB-like ATP binding protein	NA
UHGV-0119165_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0119165_16	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0119165_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0119165_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0119165_17	UniRef90	UniRef90_UPI000378B16C	single-stranded DNA-binding protein	NA
UHGV-0119165_17	eggNOG-mapper	1121440.AUMA01000010_gene392	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0119165_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0119165_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0119165_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0119165_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0119165_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0119165_18	PHROG	phrog_824	NA	unknown function
UHGV-0119165_18	UniRef90	UniRef90_A0A120KLV2	VRR-NUC domain-containing protein	NA
UHGV-0119165_18	eggNOG-mapper	563192.HMPREF0179_01752	VRR_NUC	NA
UHGV-0119165_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0119165_19	Structural annotation	PF02796	NA	NA
UHGV-0119165_20	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119165_20	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0119165_20	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0119165_22	PHROG	phrog_474	phosphofructokinase	other
UHGV-0119165_22	UniRef90	UniRef90_A0A7X6GRJ7	NA	NA
UHGV-0119165_22	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0119165_22	Pfam	PF19905	NA	DUF6378
UHGV-0119165_22	Structural annotation	PF19905	NA	NA
UHGV-0119165_25	UniRef90	UniRef90_UPI00195D56BF	nrdD protein	NA
UHGV-0119165_25	eggNOG-mapper	665956.HMPREF1032_01737	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0119165_25	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0119165_25	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0119165_26	eggNOG-mapper	525146.Ddes_0259	NA	NA
UHGV-0119165_26	Structural annotation	PF00544, COG3866	NA	NA
UHGV-0119165_28	PHROG	phrog_24780	NA	unknown function
UHGV-0119165_28	UniRef90	UniRef90_A0A807ZPV6	Pesticin domain-containing protein	NA
UHGV-0119165_28	eggNOG-mapper	665942.HMPREF1022_00135	Bacterial toxin homologue of phage lysozyme, C-term	NA
UHGV-0119165_28	Pfam	PF16754	Bacterial toxin homologue of phage lysozyme, C-term	Pesticin
UHGV-0119165_28	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0119165_28	Structural annotation	PF16754, MF_04136, COG3772	NA	NA
UHGV-0119165_29	PHROG	phrog_1544	NA	unknown function
UHGV-0119165_29	UniRef90	UniRef90_A0A388SKI6	NA	NA
UHGV-0119165_29	eggNOG-mapper	207559.Dde_2569	Glycosyl hydrolase 108	NA
UHGV-0119165_29	COG	COG3926	Lysozyme family protein	NA
UHGV-0119165_30	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0119165_31	PHROG	phrog_12540	NA	unknown function
UHGV-0119165_31	UniRef90	UniRef90_A0A5Q2W839	Putative DNA binding domain	NA
UHGV-0119165_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119165_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0119165_32	UniRef90	UniRef90_A0A6B3UE32	PBSX family phage terminase large subunit	NA
UHGV-0119165_32	eggNOG-mapper	1217652.F954_02867	Phage terminase large subunit	NA
UHGV-0119165_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0119165_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0119165_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119165_32	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0119165_33	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0119165_33	UniRef90	UniRef90_A0A516LL11	Putative portal protein	NA
UHGV-0119165_33	eggNOG-mapper	1380394.JADL01000008_gene3768	Membrane	NA
UHGV-0119165_33	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0119165_33	Structural annotation	PF12236, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0119165_35	PHROG	phrog_3927	head scaffolding protein	head and packaging
UHGV-0119165_36	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0119165_36	UniRef90	UniRef90_UPI00097D27EC	NA	NA
UHGV-0119165_36	eggNOG-mapper	1380394.JADL01000008_gene3764	NA	NA
UHGV-0119165_36	Pfam	PF17236	NA	DUF5309
UHGV-0119165_36	Structural annotation	PF17236, MF_04119, NF033394, COG4834	NA	NA
UHGV-0119165_38	PHROG	phrog_2941	virion structural protein	head and packaging
UHGV-0119165_38	eggNOG-mapper	579138.Zymop_0816	NA	NA
UHGV-0119165_38	Structural annotation	PF20387	NA	NA
UHGV-0119165_39	PHROG	phrog_240	head protein	head and packaging
UHGV-0119165_39	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0119165_39	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0119165_41	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0119165_41	UniRef90	UniRef90_A0A7S5Y917	Stabilization protein	NA
UHGV-0119165_41	eggNOG-mapper	1380394.JADL01000008_gene3759	NA	NA
UHGV-0119165_41	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0119165_42	Structural annotation	PF15868, NF012201	NA	NA
UHGV-0119165_45	eggNOG-mapper	665942.HMPREF1022_02936	NA	NA
UHGV-0119165_45	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0119165_46	PHROG	phrog_4287	DNA ejection protein	DNA, RNA and nucleotide metabolism
UHGV-0119165_46	eggNOG-mapper	1380394.JADL01000008_gene3756	NA	NA
UHGV-0119165_47	PHROG	phrog_13634	NA	unknown function
UHGV-0119165_47	eggNOG-mapper	1238450.VIBNISOn1_1190023	NA	NA
UHGV-0119165_47	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0119165_49	PHROG	phrog_5795	tail protein	tail
UHGV-0119165_49	UniRef90	UniRef90_C3X7Y2	Phage Tail Collar Domain protein	NA
UHGV-0119165_49	eggNOG-mapper	1009370.ALO_01669	tail collar domain protein	NA
UHGV-0119165_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0119165_49	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0119165_50	Pfam	PF13671	AAA domain	AAA_33
UHGV-0119165_51	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0119165_51	UniRef90	UniRef90_UPI001C39868D	Phage tail assembly chaperone	NA
UHGV-0119165_51	eggNOG-mapper	411464.DESPIG_01098	Phage tail assembly chaperone protein	NA
UHGV-0119165_51	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0119165_51	Structural annotation	PF16778	NA	NA
UHGV-0119165_52	Pfam	PF18338	Lower baseplate protein N-terminal domain	BppL_N
UHGV-0119165_53	UniRef90	UniRef90_UPI0013F5D6F0	phage tail assembly chaperone	NA
UHGV-0119165_53	eggNOG-mapper	742823.HMPREF9465_00194	NA	NA
UHGV-0119165_54	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0119165_54	Structural annotation	NF040910	NA	NA