UHGV-0119188

Genome information

Genome length 38,021 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119188
vOTU ID	vOTU-045800
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_290098
BioSample	SAMEA4378328
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.93
Jumbo phage	No

Genome content
Genome length	38,021 bps
GC content	53.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.81%
Average CDS length	631.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119188_1	KOfam	K14059	int; integrase	NA
UHGV-0119188_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0119188_1	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0119188_1	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0119188_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119188_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119188_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0119188_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0119188_3	UniRef90	UniRef90_A0A662PWD9	Transcriptional regulator	NA
UHGV-0119188_3	eggNOG-mapper	1121929.KB898665_gene2939	Transcriptional regulator	NA
UHGV-0119188_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119188_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0119188_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0119188_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0119188_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119188_4	UniRef90	UniRef90_A0A316NRL5	XRE family transcriptional regulator	NA
UHGV-0119188_4	eggNOG-mapper	883109.HMPREF0380_00272	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0119188_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119188_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0119188_5	UniRef90	UniRef90_A0A174QJI6	XRE family transcriptional regulator	NA
UHGV-0119188_5	eggNOG-mapper	1235796.C815_00951	NA	NA
UHGV-0119188_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0119188_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119188_6	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0119188_7	Structural annotation	PF16857	NA	NA
UHGV-0119188_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0119188_14	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0119188_15	PHROG	phrog_1029	NA	unknown function
UHGV-0119188_15	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0119188_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0119188_16	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0119188_16	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119188_16	UniRef90	UniRef90_UPI001959E3D8	AAA family ATPase	NA
UHGV-0119188_16	eggNOG-mapper	1382358.JHVN01000024_gene1691	NA	NA
UHGV-0119188_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0119188_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0119188_16	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0119188_17	PHROG	phrog_862	NA	unknown function
UHGV-0119188_17	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0119188_17	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0119188_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0119188_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0119188_18	UniRef90	UniRef90_UPI00195A5026	MBL fold metallo-hydrolase	NA
UHGV-0119188_18	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0119188_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0119188_18	dbAPIS	APIS058	NA	NA
UHGV-0119188_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0119188_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0119188_19	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0119188_19	UniRef90	UniRef90_A0A2H4JF78	Putative DNA replication protein	NA
UHGV-0119188_19	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0119188_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0119188_19	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0119188_21	PHROG	phrog_2045	NA	unknown function
UHGV-0119188_21	UniRef90	UniRef90_A0A6I2QXE4	NA	NA
UHGV-0119188_21	eggNOG-mapper	1235793.C809_02199	NA	NA
UHGV-0119188_21	Pfam	PF07505	NA	DUF5131
UHGV-0119188_21	COG	COG4422	NA	NA
UHGV-0119188_21	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0119188_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119188_22	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0119188_22	eggNOG-mapper	476272.RUMHYD_01454	NA	NA
UHGV-0119188_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0119188_23	PHROG	phrog_9659	NA	unknown function
UHGV-0119188_23	UniRef90	UniRef90_UPI000A26FDC2	NA	NA
UHGV-0119188_23	Structural annotation	PF15956	NA	NA
UHGV-0119188_24	eggNOG-mapper	1235835.C814_01160	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0119188_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0119188_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0119188_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0119188_25	UniRef90	UniRef90_A0A1Y4IDZ0	Methyltransferase	NA
UHGV-0119188_25	eggNOG-mapper	1321782.HMPREF1986_02265	N-4 methylation of cytosine	NA
UHGV-0119188_25	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0119188_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0119188_25	COG	COG0863	DNA modification methylase	NA
UHGV-0119188_25	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0119188_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0119188_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119188_26	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0119188_26	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-0119188_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0119188_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119188_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0119188_27	UniRef90	UniRef90_UPI000A26C9C4	P27 family phage terminase small subunit	NA
UHGV-0119188_27	eggNOG-mapper	1265845.PWEIH_00610	Phage terminase, small subunit	NA
UHGV-0119188_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0119188_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119188_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119188_28	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0119188_28	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0119188_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119188_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119188_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119188_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119188_29	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-0119188_29	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0119188_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119188_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0119188_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119188_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119188_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0119188_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0119188_30	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0119188_30	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0119188_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0119188_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0119188_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0119188_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0119188_31	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0119188_31	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0119188_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0119188_31	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0119188_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0119188_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0119188_31	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0119188_32	PHROG	phrog_749	NA	unknown function
UHGV-0119188_32	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0119188_32	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0119188_33	PHROG	phrog_19734	NA	unknown function
UHGV-0119188_33	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0119188_33	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0119188_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0119188_34	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0119188_34	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0119188_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0119188_35	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0119188_35	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0119188_35	Structural annotation	TIGR01725	NA	NA
UHGV-0119188_36	PHROG	phrog_88	major tail protein	tail
UHGV-0119188_36	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0119188_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0119188_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0119188_38	KOfam	K21954	FYCO1; FYVE and coiled-coil domain-containing protein 1	NA
UHGV-0119188_38	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0119188_38	UniRef90	UniRef90_UPI001C12009F	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0119188_38	eggNOG-mapper	1123314.AUIO01000016_gene849	Phage tail tape measure protein	NA
UHGV-0119188_38	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0119188_38	Structural annotation	PF20155	NA	NA
UHGV-0119188_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0119188_39	UniRef90	UniRef90_A3DG50	Phage tail component	NA
UHGV-0119188_39	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0119188_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0119188_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0119188_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0119188_40	UniRef90	UniRef90_A0A2V2F1H4	Prophage_tail domain-containing protein	NA
UHGV-0119188_40	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0119188_40	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0119188_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0119188_40	COG	COG4926	Phage-related protein	NA
UHGV-0119188_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0119188_41	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0119188_41	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0119188_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0119188_45	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0119188_45	eggNOG-mapper	1381751.JAJB01000050_gene159	NA	NA
UHGV-0119188_45	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0119188_45	Structural annotation	PF14600	NA	NA
UHGV-0119188_46	UniRef90	UniRef90_A0A2V2F4N2	Branched-chain amino acid ABC transporter permease	NA
UHGV-0119188_46	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0119188_47	PHROG	phrog_1129	holin	lysis
UHGV-0119188_47	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-0119188_47	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0119188_47	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0119188_47	Structural annotation	PF06946	NA	NA
UHGV-0119188_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0119188_48	PHROG	phrog_435	endolysin	lysis
UHGV-0119188_48	UniRef90	UniRef90_A0A3D2AA77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119188_48	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0119188_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0119188_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119188_48	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0119188_49	UniRef90	UniRef90_A0A3A8YAP8	XRE family transcriptional regulator	NA
UHGV-0119188_49	eggNOG-mapper	1291050.JAGE01000002_gene3398	NA	NA
UHGV-0119188_49	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0119188_53	PHROG	phrog_30542	NA	unknown function
UHGV-0119188_53	eggNOG-mapper	632292.Calhy_0428	NA	NA
UHGV-0119188_53	PADLOC	icity0043	NA	CRISPR-CAS
UHGV-0119188_54	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0119188_54	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0119188_54	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0119188_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA