UHGV-0119300

Genome information

Genome length 22,578 bps

CDS count 36

Completeness 54.19% (medium-quality)

geNomad score 0.9608

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119300
vOTU ID	vOTU-042407
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_296918
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9608
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.72
Jumbo phage	No

Genome content
Genome length	22,578 bps
GC content	55.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	89.94%
Average CDS length	567.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119300_1	UniRef90	UniRef90_H1HS54	Tyr recombinase domain-containing protein	NA
UHGV-0119300_1	eggNOG-mapper	1280698.AUJS01000099_gene164	Phage integrase family	NA
UHGV-0119300_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119300_2	eggNOG-mapper	585394.RHOM_02025	NA	NA
UHGV-0119300_3	eggNOG-mapper	411483.FAEPRAA2165_00560	Relaxase mobilization nuclease domain protein	NA
UHGV-0119300_3	COG	COG3843	Type IV secretory pathway, VirD2 component (relaxase)	NA
UHGV-0119300_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0119300_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0119300_4	UniRef90	UniRef90_UPI001D0F3786	helix-turn-helix domain-containing protein	NA
UHGV-0119300_4	eggNOG-mapper	411471.SUBVAR_07015	NA	NA
UHGV-0119300_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119300_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0119300_4	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0119300_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0119300_5	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0119300_5	UniRef90	UniRef90_A0A3E3E453	Helix-turn-helix domain-containing protein	NA
UHGV-0119300_5	eggNOG-mapper	1235798.C817_02945	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119300_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119300_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119300_6	UniRef90	UniRef90_UPI000AE5279C	helix-turn-helix transcriptional regulator	NA
UHGV-0119300_6	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0119300_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119300_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0119300_11	PHROG	phrog_310	transposase	integration and excision
UHGV-0119300_11	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-0119300_11	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0119300_11	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0119300_11	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0119300_11	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0119300_11	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0119300_12	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0119300_12	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0119300_12	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-0119300_12	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-0119300_12	Pfam	PF13401	AAA domain	AAA_22
UHGV-0119300_12	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0119300_14	PHROG	phrog_5671	NA	unknown function
UHGV-0119300_14	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0119300_15	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0119300_15	UniRef90	UniRef90_D1PRH7	Putative bacteriophage Mu Gam like protein	NA
UHGV-0119300_15	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-0119300_15	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0119300_15	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0119300_15	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0119300_17	PHROG	phrog_286	NA	unknown function
UHGV-0119300_17	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0119300_17	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-0119300_17	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0119300_17	Structural annotation	PF06252	NA	NA
UHGV-0119300_18	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0119300_18	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-0119300_18	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-0119300_18	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0119300_18	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0119300_18	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0119300_19	PHROG	phrog_462	lipoprotein	other
UHGV-0119300_19	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0119300_20	PHROG	phrog_25462	NA	unknown function
UHGV-0119300_20	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-0119300_20	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-0119300_20	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0119300_21	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0119300_21	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0119300_21	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0119300_21	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0119300_21	Structural annotation	PF11985	NA	NA
UHGV-0119300_22	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0119300_22	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0119300_22	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-0119300_22	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0119300_22	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0119300_22	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0119300_22	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0119300_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119300_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0119300_24	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-0119300_24	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0119300_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0119300_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0119300_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0119300_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119300_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0119300_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119300_26	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0119300_26	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0119300_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119300_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119300_27	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0119300_27	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0119300_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119300_27	COG	COG2369	NA	NA
UHGV-0119300_27	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0119300_30	PHROG	phrog_18725	NA	unknown function
UHGV-0119300_30	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0119300_31	PHROG	phrog_13589	NA	unknown function
UHGV-0119300_31	eggNOG-mapper	1298920.KI911353_gene541	ATPase involved in DNA repair	NA
UHGV-0119300_31	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0119300_31	Structural annotation	PF18463	NA	NA
UHGV-0119300_32	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0119300_32	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0119300_32	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0119300_34	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0119300_34	PHROG	phrog_14988	peptidase	other
UHGV-0119300_34	UniRef90	UniRef90_A0A6N8H8M4	M23 family peptidase	NA
UHGV-0119300_34	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0119300_34	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0119300_34	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0119300_34	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0119300_35	PHROG	phrog_13256	NA	unknown function
UHGV-0119300_36	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0119300_36	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0119300_36	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-0119300_36	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0119300_36	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0119300_36	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0119300_36	COG	COG0338	DNA-adenine methylase	NA
UHGV-0119300_36	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA