UHGV-0119317

Genome information

Genome length 51,335 bps

CDS count 79

Completeness 100.00% (complete)

geNomad score 0.9676

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119317
vOTU ID	vOTU-001838
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_299647
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9676
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.87
Jumbo phage	No

Genome content
Genome length	51,335 bps
GC content	42.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	89.24%
Average CDS length	583.79 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119317_2	PHROG	phrog_37900	NA	unknown function
UHGV-0119317_2	UniRef90	UniRef90_UPI001AB049E6	NA	NA
UHGV-0119317_2	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0119317_2	Pfam	PF19789	NA	DUF6273
UHGV-0119317_2	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0119317_2	Structural annotation	PF19789	NA	NA
UHGV-0119317_8	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0119317_9	PHROG	phrog_28918	NA	unknown function
UHGV-0119317_9	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0119317_9	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0119317_12	PHROG	phrog_158	major tail protein	tail
UHGV-0119317_12	UniRef90	UniRef90_UPI00189AB4AD	phage tail protein	NA
UHGV-0119317_12	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0119317_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0119317_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0119317_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0119317_18	UniRef90	UniRef90_A0A2K9P3U0	Phage major capsid protein E	NA
UHGV-0119317_18	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0119317_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0119317_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0119317_19	PHROG	phrog_909	major head protein	head and packaging
UHGV-0119317_19	UniRef90	UniRef90_A0A0A8JLJ9	NA	NA
UHGV-0119317_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0119317_21	UniRef90	UniRef90_UPI0013EDE607	phage portal protein	NA
UHGV-0119317_21	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0119317_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0119317_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0119317_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0119317_23	UniRef90	UniRef90_A0A1S9I916	Terminase_6C domain-containing protein	NA
UHGV-0119317_23	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0119317_23	COG	COG5410	NA	NA
UHGV-0119317_38	eggNOG-mapper	742733.HMPREF9469_00925	NA	NA
UHGV-0119317_39	KOfam	K01258	pepT; tripeptide aminopeptidase [EC:3.4.11.4]	NA
UHGV-0119317_39	PHROG	phrog_34186	NA	unknown function
UHGV-0119317_39	UniRef90	UniRef90_A0A1T4Y6L2	Peptidase family M28	NA
UHGV-0119317_39	eggNOG-mapper	411467.BACCAP_03129	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls	NA
UHGV-0119317_39	Pfam	PF04389	Peptidase family M28	Peptidase_M28
UHGV-0119317_39	COG	COG0624	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase	NA
UHGV-0119317_39	Structural annotation	PF05343, MF_00550, TIGR01883, COG1363	NA	NA
UHGV-0119317_42	eggNOG-mapper	1287476.HMPREF1651_10420	NA	NA
UHGV-0119317_48	Structural annotation	PF14173	NA	NA
UHGV-0119317_53	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119317_53	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0119317_53	eggNOG-mapper	1157635.KB892046_gene5778	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0119317_53	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0119317_53	COG	COG2887	RecB family exonuclease	NA
UHGV-0119317_53	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0119317_54	PHROG	phrog_10048	NA	unknown function
UHGV-0119317_54	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0119317_54	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0119317_56	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0119317_56	UniRef90	UniRef90_UPI001D0995BC	ERCC4 domain-containing protein	NA
UHGV-0119317_56	eggNOG-mapper	887325.HMPREF0381_0094	NA	NA
UHGV-0119317_56	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0119317_56	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0119317_58	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0119317_58	UniRef90	UniRef90_UPI00155E0C72	helix-turn-helix domain-containing protein	NA
UHGV-0119317_58	eggNOG-mapper	929558.SMGD1_0690	NA	NA
UHGV-0119317_58	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0119317_61	UniRef90	UniRef90_A0A7V6XP83	Site-specific DNA-methyltransferase	NA
UHGV-0119317_62	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0119317_62	PHROG	phrog_17284	NA	unknown function
UHGV-0119317_62	UniRef90	UniRef90_A0A350XVB1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0119317_62	eggNOG-mapper	1203606.HMPREF1526_01874	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0119317_62	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0119317_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0119317_62	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0119317_64	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0119317_64	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0119317_64	eggNOG-mapper	500633.CLOHIR_00351	DNA helicase	NA
UHGV-0119317_64	COG	COG0305	Replicative DNA helicase	NA
UHGV-0119317_64	Structural annotation	PF03796, MF_04154, NF006443, COG0305	NA	NA
UHGV-0119317_66	eggNOG-mapper	1410625.JHWK01000005_gene1354	NA	NA
UHGV-0119317_73	eggNOG-mapper	1410632.JHWW01000012_gene94	NA	NA
UHGV-0119317_78	KOfam	K01803	TPI, tpiA; triosephosphate isomerase (TIM) [EC:5.3.1.1]	NA
UHGV-0119317_78	UniRef90	UniRef90_A0A2U1RMU5	Triosephosphate isomerase	NA
UHGV-0119317_78	eggNOG-mapper	1280664.AUIX01000009_gene3870	Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P)	NA
UHGV-0119317_78	Pfam	PF00121	Triosephosphate isomerase	TIM
UHGV-0119317_78	NCBIFam	TIGR00419.1	triose-phosphate isomerase	NA
UHGV-0119317_78	COG	COG0149	Triosephosphate isomerase	NA
UHGV-0119317_78	HAMAP	MF_00147_B	Triosephosphate isomerase [tpiA]	NA
UHGV-0119317_78	Structural annotation	PF00121, MF_00147_B, NF000722, COG0149	NA	NA
UHGV-0119317_79	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0119317_79	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA