UHGV-0119335

Genome information

Genome length 39,185 bps

CDS count 44

Completeness 97.64% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119335
vOTU ID	vOTU-075653
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_292704
BioSample	SAMEA4431874
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.21
Jumbo phage	No

Genome content
Genome length	39,185 bps
GC content	42.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.67%
Average CDS length	828.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119335_1	UniRef90	UniRef90_A0A563DA47	XRE family transcriptional regulator	NA
UHGV-0119335_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119335_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0119335_2	UniRef90	UniRef90_C4FP69	DNA-binding helix-turn-helix protein	NA
UHGV-0119335_2	eggNOG-mapper	546273.VEIDISOL_00693	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119335_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119335_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119335_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0119335_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0119335_3	UniRef90	UniRef90_C4FP68	Putative toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0119335_3	eggNOG-mapper	546273.VEIDISOL_00692	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0119335_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119335_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119335_3	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0119335_4	PHROG	phrog_20936	NA	unknown function
UHGV-0119335_4	UniRef90	UniRef90_A0A134BXK6	Peptidase_M78 domain-containing protein	NA
UHGV-0119335_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0119335_4	Structural annotation	PF06114	NA	NA
UHGV-0119335_5	eggNOG-mapper	742743.HMPREF9453_01874	NA	NA
UHGV-0119335_6	KOfam	K14059	int; integrase	NA
UHGV-0119335_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0119335_6	UniRef90	UniRef90_A0A563DAX4	Site-specific integrase	NA
UHGV-0119335_6	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0119335_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119335_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119335_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0119335_7	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0119335_7	UniRef90	UniRef90_F5KZP9	HTH_59 domain-containing protein	NA
UHGV-0119335_7	eggNOG-mapper	1128111.HMPREF0870_00986	NA	NA
UHGV-0119335_7	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0119335_7	Structural annotation	PF20038, NF040990	NA	NA
UHGV-0119335_8	PHROG	phrog_18860	NA	unknown function
UHGV-0119335_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0119335_9	PHROG	phrog_435	endolysin	lysis
UHGV-0119335_9	UniRef90	UniRef90_W1WXV6	MurNAc-LAA domain-containing protein	NA
UHGV-0119335_9	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119335_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0119335_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119335_9	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0119335_10	PHROG	phrog_27828	NA	unknown function
UHGV-0119335_10	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0119335_10	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0119335_11	PHROG	phrog_5132	NA	unknown function
UHGV-0119335_11	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0119335_11	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0119335_11	Structural annotation	PF20622	NA	NA
UHGV-0119335_12	PHROG	phrog_1084	NA	unknown function
UHGV-0119335_12	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0119335_13	KOfam	K06882	NA	NA
UHGV-0119335_13	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0119335_13	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-0119335_13	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0119335_13	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0119335_13	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0119335_13	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0119335_13	COG	COG1511	NA	NA
UHGV-0119335_13	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-0119335_14	PHROG	phrog_329	minor tail protein	tail
UHGV-0119335_14	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-0119335_14	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0119335_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0119335_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0119335_14	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0119335_15	PHROG	phrog_18	minor tail protein	tail
UHGV-0119335_15	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0119335_15	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0119335_15	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0119335_15	COG	COG4672	Phage tail protein	NA
UHGV-0119335_15	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0119335_16	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0119335_17	PHROG	phrog_22443	NA	unknown function
UHGV-0119335_17	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-0119335_17	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0119335_17	COG	COG4913	NA	NA
UHGV-0119335_17	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0119335_18	PHROG	phrog_23549	NA	unknown function
UHGV-0119335_18	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0119335_19	PHROG	phrog_27248	NA	unknown function
UHGV-0119335_20	PHROG	phrog_290	minor tail protein	tail
UHGV-0119335_20	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0119335_20	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0119335_20	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0119335_20	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0119335_21	PHROG	phrog_17431	NA	unknown function
UHGV-0119335_21	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0119335_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0119335_22	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0119335_22	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0119335_22	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0119335_23	PHROG	phrog_27032	NA	unknown function
UHGV-0119335_23	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0119335_24	PHROG	phrog_122	head decoration	head and packaging
UHGV-0119335_24	UniRef90	UniRef90_A0A443JDB0	NA	NA
UHGV-0119335_24	eggNOG-mapper	1005058.UMN179_02397	NA	NA
UHGV-0119335_24	Pfam	PF09956	NA	DUF2190
UHGV-0119335_24	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0119335_25	KOfam	K06904	NA	NA
UHGV-0119335_25	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0119335_25	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-0119335_25	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0119335_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0119335_25	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0119335_25	COG	COG3087	Cell division protein FtsN	NA
UHGV-0119335_25	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0119335_26	PHROG	phrog_21	portal protein	head and packaging
UHGV-0119335_26	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-0119335_26	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0119335_26	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0119335_26	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0119335_26	COG	COG5511	Phage capsid protein	NA
UHGV-0119335_26	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0119335_27	PHROG	phrog_20307	NA	unknown function
UHGV-0119335_27	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0119335_27	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0119335_28	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0119335_28	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0119335_28	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-0119335_28	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0119335_28	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0119335_28	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0119335_28	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0119335_28	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0119335_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0119335_29	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0119335_29	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0119335_30	Pfam	PF07374	NA	DUF1492
UHGV-0119335_30	Structural annotation	PF07374, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0119335_31	PHROG	phrog_236	nucleotide kinase	other
UHGV-0119335_31	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-0119335_31	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0119335_31	Pfam	PF11753	NA	DUF3310
UHGV-0119335_31	Structural annotation	PF11753	NA	NA
UHGV-0119335_32	PHROG	phrog_918	NA	unknown function
UHGV-0119335_32	UniRef90	UniRef90_UPI001D064E70	NA	NA
UHGV-0119335_32	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-0119335_32	Pfam	PF19791	NA	DUF6275
UHGV-0119335_33	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0119335_33	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0119335_33	UniRef90	UniRef90_A0A2S7ZHG7	DEAD/DEAH box helicase	NA
UHGV-0119335_33	eggNOG-mapper	546273.VEIDISOL_00706	SNF2 family	NA
UHGV-0119335_33	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0119335_33	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0119335_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0119335_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0119335_33	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0119335_34	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119335_34	UniRef90	UniRef90_UPI001D0B6998	VRR-NUC domain-containing protein	NA
UHGV-0119335_34	eggNOG-mapper	546273.VEIDISOL_00705	VRR_NUC	NA
UHGV-0119335_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0119335_35	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0119335_35	UniRef90	UniRef90_UPI000F8E83D0	virulence-associated E family protein	NA
UHGV-0119335_35	eggNOG-mapper	546273.VEIDISOL_00704	Virulence-associated protein E	NA
UHGV-0119335_35	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0119335_35	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0119335_35	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0119335_36	PHROG	phrog_16315	NA	unknown function
UHGV-0119335_36	UniRef90	UniRef90_UPI000F8DF173	PcfJ domain-containing protein	NA
UHGV-0119335_36	eggNOG-mapper	546273.VEIDISOL_00703	PcfJ-like protein	NA
UHGV-0119335_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0119335_36	Structural annotation	PF14284	NA	NA
UHGV-0119335_38	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0119335_38	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0119335_38	UniRef90	UniRef90_A0A3A6W420	POLAc domain-containing protein	NA
UHGV-0119335_38	eggNOG-mapper	546273.VEIDISOL_00701	DNA polymerase	NA
UHGV-0119335_38	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0119335_38	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0119335_38	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0119335_39	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0119335_39	UniRef90	UniRef90_UPI001F0CBF89	NA	NA
UHGV-0119335_39	eggNOG-mapper	546273.VEIDISOL_00700	NA	NA
UHGV-0119335_39	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0119335_39	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0119335_41	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119335_41	UniRef90	UniRef90_UPI000F8EBC86	NA	NA
UHGV-0119335_41	eggNOG-mapper	546273.VEIDISOL_00698	NA	NA
UHGV-0119335_41	Pfam	PF10926	NA	DUF2800
UHGV-0119335_41	COG	COG2887	RecB family exonuclease	NA
UHGV-0119335_41	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA