UHGV-0119352

Genome information

Genome length 47,647 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119352
vOTU ID	vOTU-072618
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_298473
BioSample	SAMEA4431989
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.64
Jumbo phage	No

Genome content
Genome length	47,647 bps
GC content	41.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	90.77%
Average CDS length	603.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119352_2	PHROG	phrog_18666	NA	unknown function
UHGV-0119352_3	UniRef90	UniRef90_A0A2N5Q1U3	Transcriptional regulator	NA
UHGV-0119352_3	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119352_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119352_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119352_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0119352_4	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119352_4	UniRef90	UniRef90_UPI0013DDD289	transcriptional regulator	NA
UHGV-0119352_4	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0119352_4	AcrCatalog	cluster_5564	NA	NA
UHGV-0119352_4	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0119352_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0119352_6	PHROG	phrog_670	endolysin	lysis
UHGV-0119352_6	UniRef90	UniRef90_UPI00189DD54D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119352_6	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0119352_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0119352_6	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0119352_6	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0119352_8	PHROG	phrog_1129	holin	lysis
UHGV-0119352_8	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0119352_8	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0119352_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0119352_8	Structural annotation	PF16079	NA	NA
UHGV-0119352_9	PHROG	phrog_1863	NA	unknown function
UHGV-0119352_9	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0119352_10	PHROG	phrog_2310	NA	unknown function
UHGV-0119352_10	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0119352_11	PHROG	phrog_16164	NA	unknown function
UHGV-0119352_11	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0119352_12	UniRef90	UniRef90_UPI0006C056D8	InlB B-repeat-containing protein	NA
UHGV-0119352_12	eggNOG-mapper	1688.BCUN_1858	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0119352_12	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0119352_12	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0119352_12	Structural annotation	PF05895	NA	NA
UHGV-0119352_13	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0119352_13	UniRef90	UniRef90_UPI0006C2B16B	phage tail protein	NA
UHGV-0119352_13	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0119352_13	Structural annotation	PF14594, PF16820, TIGR01665, NF041894, COG4926	NA	NA
UHGV-0119352_14	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0119352_14	UniRef90	UniRef90_UPI001186E767	phage tail family protein	NA
UHGV-0119352_14	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0119352_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0119352_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0119352_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0119352_14	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0119352_15	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0119352_15	PHROG	phrog_5218	NA	unknown function
UHGV-0119352_15	UniRef90	UniRef90_UPI00156ED04E	phage tail tape measure protein	NA
UHGV-0119352_15	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0119352_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0119352_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0119352_15	COG	COG4487	NA	NA
UHGV-0119352_15	Structural annotation	PF10145, TIGR01760, NF011901	NA	NA
UHGV-0119352_18	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0119352_18	UniRef90	UniRef90_A0A416S3X5	Bro-N domain-containing protein	NA
UHGV-0119352_18	eggNOG-mapper	742733.HMPREF9469_01810	AntA/AntB antirepressor	NA
UHGV-0119352_18	COG	COG3617	Prophage antirepressor	NA
UHGV-0119352_18	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0119352_19	PHROG	phrog_6329	NA	unknown function
UHGV-0119352_19	UniRef90	UniRef90_A0A3Q9BAR3	Phage infection protein	NA
UHGV-0119352_19	eggNOG-mapper	552525.B5LPL4_9CAUD	NA	NA
UHGV-0119352_20	UniRef90	UniRef90_A0A0A8WED4	Ribbon-helix-helix protein, copG family	NA
UHGV-0119352_20	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0119352_22	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0119352_22	UniRef90	UniRef90_UPI00156EB9E7	Rha family transcriptional regulator	NA
UHGV-0119352_22	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0119352_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0119352_22	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0119352_22	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0119352_22	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0119352_23	PHROG	phrog_706	NA	unknown function
UHGV-0119352_23	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0119352_23	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0119352_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0119352_23	Structural annotation	PF06854	NA	NA
UHGV-0119352_24	PHROG	phrog_4450	NA	unknown function
UHGV-0119352_24	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0119352_24	Pfam	PF20378	NA	DUF6673
UHGV-0119352_24	Structural annotation	PF20378	NA	NA
UHGV-0119352_25	PHROG	phrog_3099	NA	unknown function
UHGV-0119352_25	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0119352_25	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0119352_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0119352_26	PHROG	phrog_3266	tail completion	connector
UHGV-0119352_26	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-0119352_26	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0119352_26	Structural annotation	PF12691	NA	NA
UHGV-0119352_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0119352_27	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-0119352_27	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0119352_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0119352_27	Structural annotation	PF11114	NA	NA
UHGV-0119352_28	PHROG	phrog_3366	NA	unknown function
UHGV-0119352_28	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0119352_28	Pfam	PF20536	NA	DUF6751
UHGV-0119352_28	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0119352_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0119352_29	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0119352_30	UniRef90	UniRef90_A0A6N2UF82	Head fiber protein	NA
UHGV-0119352_30	eggNOG-mapper	158787.BSCA_1013	NA	NA
UHGV-0119352_30	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0119352_31	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0119352_31	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0119352_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0119352_32	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-0119352_32	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-0119352_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0119352_32	Structural annotation	PF06810	NA	NA
UHGV-0119352_33	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0119352_33	eggNOG-mapper	1423758.BN55_08460	NA	NA
UHGV-0119352_33	Structural annotation	PF20111	NA	NA
UHGV-0119352_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119352_34	UniRef90	UniRef90_UPI001CD5437D	phage minor capsid protein	NA
UHGV-0119352_34	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0119352_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119352_34	COG	COG2369	NA	NA
UHGV-0119352_34	Structural annotation	PF06152	NA	NA
UHGV-0119352_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119352_35	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-0119352_35	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-0119352_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119352_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119352_36	PHROG	phrog_10250	NA	unknown function
UHGV-0119352_36	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-0119352_36	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0119352_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0119352_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0119352_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119352_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0119352_37	PHROG	phrog_2412	NA	unknown function
UHGV-0119352_37	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0119352_37	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0119352_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119352_39	UniRef90	UniRef90_A0A1Y4H4M5	RNA polymerase subunit sigma-70	NA
UHGV-0119352_39	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0119352_39	Structural annotation	PF02996	NA	NA
UHGV-0119352_42	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0119352_44	PHROG	phrog_15198	NA	unknown function
UHGV-0119352_44	UniRef90	UniRef90_S2YRM1	NA	NA
UHGV-0119352_44	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0119352_49	PHROG	phrog_8684	NA	unknown function
UHGV-0119352_49	UniRef90	UniRef90_F7K050	YopX domain-containing protein	NA
UHGV-0119352_49	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0119352_49	Pfam	PF09643	YopX protein	YopX
UHGV-0119352_49	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0119352_49	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0119352_51	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0119352_51	UniRef90	UniRef90_UPI000467054D	Lar family restriction alleviation protein	NA
UHGV-0119352_51	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0119352_51	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0119352_51	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0119352_51	Structural annotation	PF14354, TIGR03655, COG3811	NA	NA
UHGV-0119352_52	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119352_52	UniRef90	UniRef90_A0A2N5NVP1	HNHc domain-containing protein	NA
UHGV-0119352_52	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0119352_52	Structural annotation	PF13392	NA	NA
UHGV-0119352_53	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0119352_56	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0119352_56	UniRef90	UniRef90_A0A2N5PKG2	Phage_rep_org_N domain-containing protein	NA
UHGV-0119352_56	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0119352_56	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0119352_56	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0119352_56	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0119352_57	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0119352_57	eggNOG-mapper	1304866.K413DRAFT_1199	NA	NA
UHGV-0119352_57	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0119352_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0119352_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0119352_58	UniRef90	UniRef90_A0A2N5PKE3	Single-stranded DNA-binding protein	NA
UHGV-0119352_58	eggNOG-mapper	626523.GCWU000342_01558	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0119352_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0119352_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0119352_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0119352_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0119352_58	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0119352_59	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0119352_59	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0119352_59	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-0119352_59	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0119352_59	Pfam	PF03837	RecT family	RecT
UHGV-0119352_59	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0119352_59	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0119352_59	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0119352_60	PHROG	phrog_674	NA	unknown function
UHGV-0119352_60	UniRef90	UniRef90_UPI000462FA44	NA	NA
UHGV-0119352_60	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0119352_60	Pfam	PF07083	NA	DUF1351
UHGV-0119352_60	Structural annotation	PF07083	NA	NA
UHGV-0119352_61	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119352_61	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0119352_61	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0119352_61	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0119352_61	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0119352_61	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0119352_61	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0119352_66	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0119352_66	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0119352_66	UniRef90	UniRef90_S2Z7Q9	Rha family phage regulatory protein	NA
UHGV-0119352_66	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0119352_66	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0119352_66	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0119352_66	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0119352_66	COG	COG3617	Prophage antirepressor	NA
UHGV-0119352_66	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0119352_67	Structural annotation	NF037954	NA	NA
UHGV-0119352_70	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0119352_70	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0119352_70	UniRef90	UniRef90_A0A8B3BUM8	XRE family transcriptional regulator	NA
UHGV-0119352_70	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0119352_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119352_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119352_70	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0119352_71	PHROG	phrog_7974	NA	unknown function
UHGV-0119352_71	UniRef90	UniRef90_A7B3P6	NA	NA
UHGV-0119352_71	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0119352_71	Pfam	PF14020	NA	DUF4236
UHGV-0119352_71	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0119352_71	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0119352_72	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0119352_72	PHROG	phrog_95	integrase	integration and excision
UHGV-0119352_72	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0119352_72	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0119352_72	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0119352_72	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0119352_72	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA