UHGV-0119443

Genome information

Genome length 33,017 bps

CDS count 51

Completeness 89.42% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119443
vOTU ID	vOTU-042443
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_285368
BioSample	SAMEA4378265
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.49
Jumbo phage	No

Genome content
Genome length	33,017 bps
GC content	56.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.34%
Average CDS length	581.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119443_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0119443_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0119443_1	UniRef90	UniRef90_UPI00196875A4	LexA family transcriptional regulator	NA
UHGV-0119443_1	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-0119443_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119443_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0119443_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119443_1	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0119443_2	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-0119443_2	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0119443_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0119443_2	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0119443_10	PHROG	phrog_310	transposase	integration and excision
UHGV-0119443_10	UniRef90	UniRef90_D1PRI1	Mu transposase domain protein	NA
UHGV-0119443_10	eggNOG-mapper	665956.HMPREF1032_02979	Mu transposase, C-terminal	NA
UHGV-0119443_10	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0119443_10	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0119443_10	Pfam	PF02914	Bacteriophage Mu transposase	DDE_2
UHGV-0119443_10	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0119443_10	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0119443_10	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0119443_11	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0119443_11	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0119443_11	UniRef90	UniRef90_G9RTU4	HTH cro/C1-type domain-containing protein	NA
UHGV-0119443_11	eggNOG-mapper	665956.HMPREF1032_02978	AAA domain	NA
UHGV-0119443_11	Pfam	PF13401	AAA domain	AAA_22
UHGV-0119443_11	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0119443_14	PHROG	phrog_36365	NA	unknown function
UHGV-0119443_14	eggNOG-mapper	665956.HMPREF1032_02975	NA	NA
UHGV-0119443_16	PHROG	phrog_2717	NA	unknown function
UHGV-0119443_16	eggNOG-mapper	665956.HMPREF1032_04088	NA	NA
UHGV-0119443_17	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-0119443_17	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-0119443_21	AcrCatalog	cluster_167795	NA	NA
UHGV-0119443_22	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0119443_22	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0119443_22	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-0119443_22	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0119443_22	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0119443_22	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0119443_23	PHROG	phrog_286	NA	unknown function
UHGV-0119443_23	UniRef90	UniRef90_A0A372V3L1	Regulatory protein GemA	NA
UHGV-0119443_23	eggNOG-mapper	665956.HMPREF1032_02964	NA	NA
UHGV-0119443_23	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0119443_23	Structural annotation	PF06252	NA	NA
UHGV-0119443_24	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0119443_24	UniRef90	UniRef90_G9RTS9	Mor domain-containing protein	NA
UHGV-0119443_24	eggNOG-mapper	665956.HMPREF1032_02963	Mor transcription activator family	NA
UHGV-0119443_24	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0119443_24	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0119443_24	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0119443_25	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-0119443_25	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-0119443_26	PHROG	phrog_25462	NA	unknown function
UHGV-0119443_26	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0119443_26	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0119443_27	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0119443_27	UniRef90	UniRef90_A0A6I2UDS2	NA	NA
UHGV-0119443_27	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0119443_27	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0119443_27	Structural annotation	PF11985	NA	NA
UHGV-0119443_28	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0119443_28	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0119443_28	UniRef90	UniRef90_G9RTS5	NGN domain-containing protein	NA
UHGV-0119443_28	eggNOG-mapper	665956.HMPREF1032_02959	Transcription termination factor nusG	NA
UHGV-0119443_28	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0119443_28	Pfam	PF00467	KOW motif	KOW
UHGV-0119443_28	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0119443_28	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0119443_29	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0119443_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0119443_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0119443_30	UniRef90	UniRef90_G9RTS3	PBSX family phage terminase, large subunit	NA
UHGV-0119443_30	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0119443_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0119443_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0119443_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0119443_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0119443_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0119443_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0119443_32	UniRef90	UniRef90_G9RTS1	A118 family phage portal protein, putative	NA
UHGV-0119443_32	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0119443_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0119443_33	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0119443_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0119443_33	UniRef90	UniRef90_A0A6N3F6N5	Epidermal cell differentiation inhibitor	NA
UHGV-0119443_33	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-0119443_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0119443_33	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0119443_33	COG	COG2369	NA	NA
UHGV-0119443_33	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0119443_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0119443_35	UniRef90	UniRef90_A0A6N3F6J3	Phage minor structural protein GP20	NA
UHGV-0119443_35	eggNOG-mapper	665956.HMPREF1032_02952	Phage minor structural protein GP20	NA
UHGV-0119443_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0119443_35	Structural annotation	PF06810	NA	NA
UHGV-0119443_36	PHROG	phrog_267	major head protein	head and packaging
UHGV-0119443_36	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0119443_36	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0119443_36	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0119443_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0119443_37	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0119443_38	PHROG	phrog_3366	NA	unknown function
UHGV-0119443_38	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0119443_38	Pfam	PF20536	NA	DUF6751
UHGV-0119443_38	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0119443_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0119443_39	UniRef90	UniRef90_UPI001D0AB638	minor capsid protein	NA
UHGV-0119443_39	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0119443_39	Structural annotation	PF11114	NA	NA
UHGV-0119443_40	PHROG	phrog_3266	tail completion	connector
UHGV-0119443_40	UniRef90	UniRef90_A0A355D907	Chloramphenicol resistance protein	NA
UHGV-0119443_40	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-0119443_40	Structural annotation	PF12691	NA	NA
UHGV-0119443_41	PHROG	phrog_820	major tail protein	tail
UHGV-0119443_41	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0119443_41	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-0119443_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0119443_42	PHROG	phrog_4450	NA	unknown function
UHGV-0119443_42	UniRef90	UniRef90_A0A846J672	AP endonuclease	NA
UHGV-0119443_42	Pfam	PF20378	NA	DUF6673
UHGV-0119443_42	Structural annotation	PF20378	NA	NA
UHGV-0119443_43	PHROG	phrog_706	NA	unknown function
UHGV-0119443_43	UniRef90	UniRef90_A0A6N3F5V9	Bacteriophage Gp15 protein	NA
UHGV-0119443_43	eggNOG-mapper	665956.HMPREF1032_02943	Bacteriophage Gp15 protein	NA
UHGV-0119443_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0119443_43	Structural annotation	PF06854	NA	NA
UHGV-0119443_44	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0119443_44	UniRef90	UniRef90_G9RTQ8	Tape measure domain-containing protein	NA
UHGV-0119443_44	eggNOG-mapper	665956.HMPREF1032_02942	Phage tail tape measure protein TP901	NA
UHGV-0119443_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0119443_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0119443_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0119443_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0119443_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0119443_45	UniRef90	UniRef90_A0A6N3F5Z2	Phage tail protein	NA
UHGV-0119443_45	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0119443_45	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0119443_46	PHROG	phrog_538	minor tail protein	tail
UHGV-0119443_46	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0119443_46	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0119443_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0119443_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0119443_47	PHROG	phrog_9534	head protein	head and packaging
UHGV-0119443_47	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0119443_47	Structural annotation	PF21567	NA	NA
UHGV-0119443_49	Structural annotation	PF11514	NA	NA
UHGV-0119443_50	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0119443_50	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0119443_50	UniRef90	UniRef90_A0A0W7TLV7	Peptidase_M23 domain-containing protein	NA
UHGV-0119443_50	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0119443_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0119443_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0119443_50	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0119443_51	PHROG	phrog_20258	NA	unknown function
UHGV-0119443_51	eggNOG-mapper	665956.HMPREF1032_02927	NA	NA