UHGV-0119495

Genome information

Genome length 36,603 bps

CDS count 52

Completeness 97.78% (high-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119495
vOTU ID	vOTU-014810
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_283954
BioSample	SAMEA4378244
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.67
Jumbo phage	No

Genome content
Genome length	36,603 bps
GC content	36.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.68%
Average CDS length	650.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119495_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0119495_1	PHROG	phrog_7	endolysin	lysis
UHGV-0119495_1	UniRef90	UniRef90_D4MWZ1	Lysozyme	NA
UHGV-0119495_1	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0119495_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0119495_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0119495_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0119495_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0119495_1	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0119495_2	PHROG	phrog_199	holin	lysis
UHGV-0119495_2	UniRef90	UniRef90_UPI00033C89C4	phage holin family protein	NA
UHGV-0119495_2	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0119495_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0119495_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0119495_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0119495_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0119495_4	PHROG	phrog_16313	virion structural protein	head and packaging
UHGV-0119495_4	UniRef90	UniRef90_UPI0013EAC526	right-handed parallel beta-helix repeat-containing protein	NA
UHGV-0119495_4	eggNOG-mapper	86416.Clopa_2781	Pectate lyase superfamily protein	NA
UHGV-0119495_4	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0119495_5	PHROG	phrog_13289	tail protein	tail
UHGV-0119495_5	UniRef90	UniRef90_A0A1C6ES47	Phage-related protein	NA
UHGV-0119495_5	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0119495_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0119495_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0119495_5	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0119495_5	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0119495_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0119495_6	UniRef90	UniRef90_UPI00138FB3D0	phage tail protein	NA
UHGV-0119495_6	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0119495_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0119495_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0119495_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0119495_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0119495_7	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0119495_7	UniRef90	UniRef90_A0A1H0WFV4	Phage-related minor tail protein (Fragment)	NA
UHGV-0119495_7	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0119495_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0119495_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0119495_7	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0119495_8	PHROG	phrog_3033	NA	unknown function
UHGV-0119495_8	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0119495_9	PHROG	phrog_709	NA	unknown function
UHGV-0119495_9	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0119495_9	Structural annotation	PF11836	NA	NA
UHGV-0119495_10	PHROG	phrog_88	major tail protein	tail
UHGV-0119495_10	UniRef90	UniRef90_A0A3E3ILX6	Phage tail protein	NA
UHGV-0119495_10	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0119495_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0119495_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0119495_11	PHROG	phrog_78	tail terminator	connector
UHGV-0119495_11	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0119495_11	Structural annotation	PF20765	NA	NA
UHGV-0119495_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0119495_12	UniRef90	UniRef90_D9R5G6	Prophage pi2 protein 37	NA
UHGV-0119495_12	eggNOG-mapper	610130.Closa_0747	COG NOG18351 non supervised orthologous group	NA
UHGV-0119495_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0119495_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0119495_13	PHROG	phrog_19734	NA	unknown function
UHGV-0119495_13	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0119495_13	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0119495_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0119495_14	PHROG	phrog_749	NA	unknown function
UHGV-0119495_14	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0119495_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0119495_15	UniRef90	UniRef90_A0A3E4M759	Phage major capsid protein	NA
UHGV-0119495_15	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0119495_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0119495_15	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0119495_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0119495_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0119495_15	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0119495_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0119495_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0119495_16	UniRef90	UniRef90_D9R5G2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0119495_16	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0119495_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0119495_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0119495_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0119495_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119495_17	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0119495_17	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0119495_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119495_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0119495_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119495_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119495_18	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0119495_18	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0119495_19	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0119495_19	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0119495_19	UniRef90	UniRef90_D4MVN1	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0119495_19	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0119495_19	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0119495_19	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0119495_19	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0119495_19	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0119495_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119495_20	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0119495_20	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0119495_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0119495_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119495_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119495_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119495_21	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0119495_21	UniRef90	UniRef90_UPI001D57FD6D	P27 family phage terminase small subunit	NA
UHGV-0119495_21	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0119495_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0119495_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119495_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0119495_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119495_22	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0119495_22	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0119495_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0119495_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119495_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0119495_24	PHROG	phrog_216	integrase	integration and excision
UHGV-0119495_24	UniRef90	UniRef90_A0A174QLE8	Integrase	NA
UHGV-0119495_24	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0119495_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119495_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119495_24	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0119495_25	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-0119495_25	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0119495_25	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0119495_27	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0119495_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119495_27	UniRef90	UniRef90_A0A346MRL3	XRE family transcriptional regulator	NA
UHGV-0119495_27	eggNOG-mapper	1161413.HMPREF1510_1122	transcriptional	NA
UHGV-0119495_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0119495_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119495_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119495_28	eggNOG-mapper	1453496.AT03_13425	NA	NA
UHGV-0119495_29	PHROG	phrog_31560	NA	unknown function
UHGV-0119495_29	eggNOG-mapper	1408311.JNJM01000006_gene1398	NA	NA
UHGV-0119495_30	PHROG	phrog_31560	NA	unknown function
UHGV-0119495_32	PHROG	phrog_2776	NA	unknown function
UHGV-0119495_32	UniRef90	UniRef90_A0A5S4VR73	Helix-turn-helix domain-containing protein	NA
UHGV-0119495_32	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0119495_32	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0119495_33	Structural annotation	PF13518	NA	NA
UHGV-0119495_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0119495_34	UniRef90	UniRef90_A0A174QKS9	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0119495_34	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-0119495_34	Pfam	PF07374	NA	DUF1492
UHGV-0119495_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0119495_35	Structural annotation	PF06257, MF_00402, NF011237, COG4466	NA	NA
UHGV-0119495_36	PHROG	phrog_16304	NA	unknown function
UHGV-0119495_36	UniRef90	UniRef90_L1Q6L3	NA	NA
UHGV-0119495_36	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0119495_36	Pfam	PF19808	NA	DUF6291
UHGV-0119495_36	Structural annotation	PF19808	NA	NA
UHGV-0119495_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0119495_37	PHROG	phrog_15982	NA	unknown function
UHGV-0119495_37	UniRef90	UniRef90_UPI00156F52F8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0119495_37	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0119495_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0119495_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0119495_37	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0119495_38	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0119495_38	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0119495_38	UniRef90	UniRef90_A0A174QKA2	Sporulation initiation inhibitor protein soj	NA
UHGV-0119495_38	eggNOG-mapper	411470.RUMGNA_02292	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0119495_38	Pfam	PF13614	AAA domain	AAA_31
UHGV-0119495_38	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0119495_38	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0119495_39	Structural annotation	NF001604	NA	NA
UHGV-0119495_41	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0119495_41	UniRef90	UniRef90_A0A2N2CMS3	Transcriptional regulator	NA
UHGV-0119495_41	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119495_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119495_41	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0119495_41	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0119495_44	PHROG	phrog_750	NA	unknown function
UHGV-0119495_44	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-0119495_45	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0119495_45	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-0119495_45	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0119495_45	Pfam	PF11195	NA	DUF2829
UHGV-0119495_45	Structural annotation	PF11195	NA	NA
UHGV-0119495_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119495_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119495_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119495_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0119495_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0119495_48	UniRef90	UniRef90_A0A166RHX5	HTH-type transcriptional regulator SinR	NA
UHGV-0119495_48	eggNOG-mapper	1280692.AUJL01000009_gene2970	Helix-turn-helix XRE-family like proteins	NA
UHGV-0119495_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0119495_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0119495_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0119495_49	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0119495_49	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0119495_49	UniRef90	UniRef90_A0A174BZX4	DNA polymerase III polC-type	NA
UHGV-0119495_49	eggNOG-mapper	1123288.SOV_2c03960	DNA polymerase III	NA
UHGV-0119495_49	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0119495_49	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0119495_49	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0119495_49	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0119495_49	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0119495_49	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0119495_50	PHROG	phrog_2695	NA	unknown function
UHGV-0119495_50	UniRef90	UniRef90_UPI00073F50E0	SIR2 family protein	NA
UHGV-0119495_50	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0119495_50	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0119495_50	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0119495_50	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0119495_50	Structural annotation	PF13289	NA	NA
UHGV-0119495_51	PHROG	phrog_87	metallo-protease	other
UHGV-0119495_51	UniRef90	UniRef90_A0A084JI98	Peptidase_M78 domain-containing protein	NA
UHGV-0119495_51	eggNOG-mapper	318464.IO99_00420	IrrE N-terminal-like domain	NA
UHGV-0119495_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0119495_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0119495_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0119495_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0119495_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0119495_52	UniRef90	UniRef90_D4MVK2	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0119495_52	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0119495_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0119495_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0119495_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0119495_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0119495_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA