UHGV-0119512

Genome information

Genome length 32,509 bps

CDS count 49

Completeness 96.37% (high-quality)

geNomad score 0.9565

Prediction confidence Confident

Genome information
Genome ID	UHGV-0119512
vOTU ID	vOTU-061457
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_308659
BioSample	SAMEA37061668
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9565
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.15
Jumbo phage	No

Genome content
Genome length	32,509 bps
GC content	43.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.21%
Average CDS length	623.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0119512_3	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0119512_3	PHROG	phrog_822	amidase	lysis
UHGV-0119512_3	UniRef90	UniRef90_A0A316S9I6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0119512_3	eggNOG-mapper	936573.HMPREF1147_1353	Ami_2	NA
UHGV-0119512_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0119512_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0119512_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0119512_4	PHROG	phrog_199	holin	lysis
UHGV-0119512_4	UniRef90	UniRef90_A0A316S9Q0	Holin	NA
UHGV-0119512_4	eggNOG-mapper	742823.HMPREF9465_00190	Bacteriophage holin family	NA
UHGV-0119512_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0119512_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0119512_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0119512_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0119512_5	Structural annotation	PF14301	NA	NA
UHGV-0119512_6	PHROG	phrog_13336	NA	unknown function
UHGV-0119512_6	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0119512_7	eggNOG-mapper	1262914.BN533_00788	NA	NA
UHGV-0119512_8	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0119512_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0119512_9	UniRef90	UniRef90_UPI0015588CAB	phage tail family protein	NA
UHGV-0119512_9	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0119512_9	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0119512_10	PHROG	phrog_12798	NA	unknown function
UHGV-0119512_10	UniRef90	UniRef90_A0A316S9J5	TMP_3 domain-containing protein	NA
UHGV-0119512_10	eggNOG-mapper	457415.HMPREF1006_00474	tape measure	NA
UHGV-0119512_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0119512_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0119512_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0119512_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0119512_11	PHROG	phrog_7377	NA	unknown function
UHGV-0119512_12	PHROG	phrog_2115	tail protein	tail
UHGV-0119512_12	Structural annotation	PF11836	NA	NA
UHGV-0119512_13	PHROG	phrog_41	major tail protein	tail
UHGV-0119512_13	UniRef90	UniRef90_UPI000F0C9042	phage tail tube protein	NA
UHGV-0119512_13	eggNOG-mapper	1262914.BN533_00191	Phage tail tube protein	NA
UHGV-0119512_13	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0119512_14	eggNOG-mapper	1262914.BN533_00191	Phage tail tube protein	NA
UHGV-0119512_14	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0119512_15	PHROG	phrog_176	tail terminator	connector
UHGV-0119512_15	UniRef90	UniRef90_UPI000F0C6298	NA	NA
UHGV-0119512_15	Pfam	PF11367	NA	DUF3168
UHGV-0119512_15	Structural annotation	PF16807	NA	NA
UHGV-0119512_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0119512_16	UniRef90	UniRef90_UPI000F0C5A82	HK97 gp10 family phage protein	NA
UHGV-0119512_16	eggNOG-mapper	1262914.BN533_00193	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0119512_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0119512_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0119512_16	COG	COG5005	NA	NA
UHGV-0119512_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0119512_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0119512_17	UniRef90	UniRef90_UPI000F0CE808	phage head closure protein	NA
UHGV-0119512_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0119512_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0119512_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0119512_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0119512_18	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0119512_18	UniRef90	UniRef90_UPI0013D4E63B	head-tail connector protein	NA
UHGV-0119512_18	eggNOG-mapper	1262914.BN533_00195	Phage gp6-like head-tail connector protein	NA
UHGV-0119512_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0119512_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0119512_18	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0119512_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0119512_19	UniRef90	UniRef90_A0A316SB81	Phage major capsid protein	NA
UHGV-0119512_19	eggNOG-mapper	1262914.BN533_00196	Phage capsid family	NA
UHGV-0119512_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0119512_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0119512_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0119512_20	KOfam	K06904	NA	NA
UHGV-0119512_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0119512_20	UniRef90	UniRef90_R5AV89	Phage prohead protease HK97 family	NA
UHGV-0119512_20	eggNOG-mapper	1262914.BN533_00197	Phage prohead protease, HK97 family	NA
UHGV-0119512_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0119512_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0119512_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0119512_21	UniRef90	UniRef90_A0A316S9L1	Phage portal protein	NA
UHGV-0119512_21	eggNOG-mapper	1262914.BN533_00198	Phage portal protein, HK97 family	NA
UHGV-0119512_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0119512_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0119512_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0119512_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0119512_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0119512_23	UniRef90	UniRef90_A0A316S9R8	Terminase large subunit	NA
UHGV-0119512_23	eggNOG-mapper	1262914.BN533_00200	terminase, large subunit	NA
UHGV-0119512_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0119512_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0119512_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0119512_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0119512_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0119512_24	UniRef90	UniRef90_A0A7X9I6W6	Phage terminase small subunit P27 family	NA
UHGV-0119512_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0119512_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0119512_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0119512_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0119512_25	UniRef90	UniRef90_A0A316S8C6	HNHc domain-containing protein	NA
UHGV-0119512_25	eggNOG-mapper	1007103.AFHW01000096_gene3242	HNH nucleases	NA
UHGV-0119512_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0119512_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0119512_26	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0119512_26	Structural annotation	PF05263, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0119512_27	PHROG	phrog_236	nucleotide kinase	other
UHGV-0119512_27	UniRef90	UniRef90_UPI001F21BF82	NA	NA
UHGV-0119512_27	eggNOG-mapper	1003200.AXXA_28145	NA	NA
UHGV-0119512_27	Pfam	PF11753	NA	DUF3310
UHGV-0119512_29	PHROG	phrog_35896	NA	unknown function
UHGV-0119512_30	PHROG	phrog_36825	NA	unknown function
UHGV-0119512_30	UniRef90	UniRef90_A0A059NXT4	DnaD domain protein	NA
UHGV-0119512_30	eggNOG-mapper	1262914.BN533_00206	DnaD domain protein	NA
UHGV-0119512_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0119512_30	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0119512_31	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0119512_31	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0119512_31	UniRef90	UniRef90_R6IEU2	DNA polymerase III subunit beta	NA
UHGV-0119512_31	Structural annotation	PF02768, PF00712, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0119512_32	Structural annotation	NF007260	NA	NA
UHGV-0119512_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0119512_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0119512_33	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0119512_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0119512_33	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0119512_34	PHROG	phrog_6058	NA	unknown function
UHGV-0119512_35	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0119512_37	PHROG	phrog_2232	NA	unknown function
UHGV-0119512_37	UniRef90	UniRef90_A0A8I1WIS7	NA	NA
UHGV-0119512_37	eggNOG-mapper	1282876.BAOK01000001_gene3102	NA	NA
UHGV-0119512_37	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0119512_42	UniRef90	UniRef90_A0A374P9Q2	XRE family transcriptional regulator	NA
UHGV-0119512_42	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0119512_42	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0119512_43	UniRef90	UniRef90_UPI00071E9E7D	helix-turn-helix domain-containing protein	NA
UHGV-0119512_43	eggNOG-mapper	929506.CbC4_1186	NA	NA
UHGV-0119512_45	UniRef90	UniRef90_A0A1M6P9T6	zinc_ribbon_2 domain-containing protein	NA
UHGV-0119512_46	UniRef90	UniRef90_UPI000BE3C692	NA	NA
UHGV-0119512_46	eggNOG-mapper	536233.CLO_1674	NA	NA
UHGV-0119512_46	PADLOC	Pyc_3TM	NA	Pycsar
UHGV-0119512_46	Pfam	PF18967	Pycsar effector protein	PycTM
UHGV-0119512_47	UniRef90	UniRef90_UPI000BE3262A	adenylate cyclase	NA
UHGV-0119512_47	eggNOG-mapper	190304.FN1550	Pfam Adenylate and Guanylate cyclase catalytic domain	NA
UHGV-0119512_47	PADLOC	PycC_CladeC	NA	Pycsar
UHGV-0119512_47	Pfam	PF00211	Adenylate and Guanylate cyclase catalytic domain	Guanylate_cyc
UHGV-0119512_47	COG	COG2114	Adenylate cyclase, class 3	NA
UHGV-0119512_48	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0119512_48	PHROG	phrog_8036	NA	unknown function
UHGV-0119512_48	UniRef90	UniRef90_A0A1M4UFY1	DNA-damage-inducible protein D	NA
UHGV-0119512_48	eggNOG-mapper	478749.BRYFOR_08484	NA	NA
UHGV-0119512_48	AcrCatalog	cluster_17589	NA	NA
UHGV-0119512_48	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0119512_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0119512_48	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0119512_48	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0119512_48	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0119512_49	KOfam	K14059	int; integrase	NA
UHGV-0119512_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0119512_49	UniRef90	UniRef90_A0A316S8G2	Tyr recombinase domain-containing protein	NA
UHGV-0119512_49	eggNOG-mapper	1123288.SOV_2c10320	Belongs to the 'phage' integrase family	NA
UHGV-0119512_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0119512_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0119512_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA